Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_O21
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   121   6e-29
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    29   0.24 
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   0.74 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    28   0.74 
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   5.2  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   6.9  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         24   9.1  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  121 bits (291), Expect = 6e-29
 Identities = 58/126 (46%), Positives = 79/126 (62%)
 Frame = -1

Query: 445 LNTIILSSSGVTVT*THHALIENNYSQATQSLFITITLGIYFTILQAYEYLEAPFTIADS 266
           LNT+IL +SG ++T  H++LI  N   A + L++TI L   F   QAYEY  APFTI+DS
Sbjct: 144 LNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGGQAYEYWNAPFTISDS 203

Query: 265 IYGSTFFMATGFHGLHVIIGTLFLLICFLRXXXXXXXXXXXXXFEAAA*Y*HFVDVV*LF 86
           +YG++F+ ATG HG+H+I+GT+ LL+                 FE    Y HF DVV LF
Sbjct: 204 VYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYYWHFCDVVWLF 263

Query: 85  LYISIY 68
           LY++IY
Sbjct: 264 LYLTIY 269


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 263 LWINFFYGYWISWPSCNYW 207
           LW+N  +  W+SW SCN++
Sbjct: 335 LWLNEGFATWMSWFSCNHF 353


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 27.9 bits (59), Expect = 0.74
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = -1

Query: 334 LGIYFTILQAYEYLE----APFTIADSIYGSTFFMATGFHGLHVI------IGTLFLLIC 185
           L IYF+ L +YE +E       T+ DS+YG   +     H L  I         L LLIC
Sbjct: 131 LTIYFSTLLSYEKVENLIKKSLTVIDSLYGLLNYQINAQHSLGCIPLNQDSFKQLKLLIC 190

Query: 184 FL 179
            L
Sbjct: 191 IL 192


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.9 bits (59), Expect = 0.74
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = +1

Query: 76  KYKEIIILHLQSVNIMQ---LLQIQSDDYL--RNDLSYDVKSKLIKIMFQ*LHEGHE 231
           KY+EII+ H Q    MQ   LL+I S D L  +  LSY   +++  +++   ++ +E
Sbjct: 238 KYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQSLVYPIAYKTNE 294


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 14/53 (26%), Positives = 32/53 (60%)
 Frame = +1

Query: 79  YKEIIILHLQSVNIMQLLQIQSDDYLRNDLSYDVKSKLIKIMFQ*LHEGHEIQ 237
           Y  I ILH QS++ ++ +++ SD++L   + +D +  L  I F  + + ++++
Sbjct: 304 YMLIKILHFQSISKIEHIELISDNFLL--IQHDSQLSLWDITFGTIQDVYDLK 354


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = -1

Query: 385 IENNYSQATQSLFITITLGIYFTILQAYEYLEAPFTIADSI 263
           +  +YS  +  L++ +  G+Y + L++Y+    P   A  +
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYKPKAVPSETAAEV 48


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +1

Query: 22  SRVXXXXXXIINYLISK*KYKEIIILHLQSVNIMQLLQIQSDDYLRNDLSYDVKSK 189
           +R+       + Y  SK  Y+E+I  ++ +VN+ +      ++Y  N  S+D++ +
Sbjct: 318 ARIYNTLLKYMRYQYSKRGYQEVITPNMYNVNLWK-TSGHWNNYSENMFSFDIEKE 372


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 298 YLEAPFTIADSIYGSTFF 245
           YL+ PFT+  S++   FF
Sbjct: 124 YLQGPFTLCVSVWNDQFF 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,401
Number of Sequences: 5004
Number of extensions: 21635
Number of successful extensions: 61
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)