Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_O18
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    80   6e-17
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   1.9  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   2.6  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    25   3.4  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    24   5.9  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    24   5.9  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    24   5.9  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   5.9  
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    24   5.9  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    24   5.9  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    23   7.9  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    23   7.9  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    23   7.9  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 80.2 bits (189), Expect = 6e-17
 Identities = 34/56 (60%), Positives = 44/56 (78%)
 Frame = +2

Query: 35  MAKSKNHTNHNQNRKAHRNGIKKPKKVRHESTLGMDPKFLRNQRFCKKGNLKPAKQ 202
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S    D KF RNQ+F  +G ++  +Q
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQ 56


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 66   TKTEKLIEMELKNRRRSDTNPHLAWILNS*GT 161
            TK +KL   E+K + R      LAW+ +  GT
Sbjct: 1014 TKKKKLTRNEIKAKERRARERELAWLQSPKGT 1045


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 222 LSAALNNCLAGLRLPFLQNLWFL 154
           LS  +N+ +   ++PFLQ LW+L
Sbjct: 618 LSHGINHGILLRKVPFLQYLWYL 640


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 26  LSEMAKS-KNHTNHNQNRKAHRNGIKKPKKVRHESTLGMDPKFLRNQRFCKKGNLK 190
           L ++A S K H+ +  ++K+++NG KK K V   ++     + LR  R     N+K
Sbjct: 170 LLDLALSEKTHSLNKASKKSNKNGDKKRKHVSKSNSKHAKHE-LRTNRMLDGENVK 224


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = -2

Query: 184 VTFFTEPLVPQEFRIHAKCGFVSD 113
           V+FF+ P + Q+ +++A  GF+++
Sbjct: 570 VSFFSRPEMTQDSQLNASSGFLTN 593


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 187 KVTFFTEPLVPQEFRIHAKCGFVSDLLRFFNSISMSFSVLVM 62
           K T F  PL+  E+  H     +  LLR FNS       +V+
Sbjct: 632 KATGFIIPLMEPEYASHFTRRIMKILLREFNSPDEEMKKIVL 673


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 35  MAKSKNHTNHNQNRKAHRNGIKKPKK 112
           +AK  +  NHN ++ A +  I +P+K
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -2

Query: 127 GFVSDLLRFFNSISMSFSVLVMICMILRLGHFA*VSVYNPRA 2
           GF+ DL  F+  +     V +++   +   H   + V+ PR+
Sbjct: 219 GFLPDLFSFWRDLGTHHLVSIILFTRVEYSHHGPMCVWQPRS 260


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 2   GTRVIYGNLSEMAKSKNHTNHNQNRKAHRNGIKKPKKVRH 121
           G+R+  G    MAK+  HT   +    H   + K  K+ H
Sbjct: 62  GSRIFMGKTKVMAKALGHTPEEE----HAENVSKLTKLLH 97


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 99  KNRRRSDTNPHLAW--ILNS*GTRGSVKKVTLNPPSS 203
           K  R SD+  H     +LNS G+  S+KK    PPSS
Sbjct: 118 KPTRESDSLKHQKSHPMLNSLGSSLSLKKSVSRPPSS 154


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 196  GGFKVTFFTEPLVPQEFRIHAKCG 125
            GGF  + F   + PQE+  H   G
Sbjct: 992  GGFIASRFLTGIAPQEYYFHCMAG 1015


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 14  IYGNL-SEMAKSKNHTNHNQNRKAHRNGIKKPKKVRH 121
           +YG + +EM  ++     N+N   +R  + KP   ++
Sbjct: 447 LYGKVQTEMVSNRGEAVLNENNSKNRTNVTKPNSYKN 483


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 60  IITKTEKLIEMELKNRRRSDTNPH 131
           II  TEK + + L+NR   DT  H
Sbjct: 715 IIPTTEKSLYLPLRNRSTIDTISH 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,050,891
Number of Sequences: 5004
Number of extensions: 17801
Number of successful extensions: 60
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)