Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_O18
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0115 - 11248021-11248101,11249017-11249118 85 1e-17
05_03_0661 - 16726958-16726966,16727133-16727234 58 2e-09
11_04_0234 + 15187065-15188241,15188316-15188494 29 0.56
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 28 1.7
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 27 2.3
03_06_0638 + 35222994-35223265,35223521-35223610,35224189-352243... 27 4.0
01_06_0258 + 27950196-27950749,27953670-27954570 27 4.0
03_05_0122 - 21025469-21026719 26 5.2
11_06_0128 - 20389375-20389781,20389988-20392787 26 6.9
10_08_0419 - 17783202-17784938 26 6.9
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 26 6.9
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002... 25 9.2
02_01_0254 - 1669461-1669590,1669833-1672318 25 9.2
>01_02_0115 - 11248021-11248101,11249017-11249118
Length = 60
Score = 85.0 bits (201), Expect = 1e-17
Identities = 38/52 (73%), Positives = 43/52 (82%)
Frame = +2
Query: 35 MAKSKNHTNHNQNRKAHRNGIKKPKKVRHESTLGMDPKFLRNQRFCKKGNLK 190
MAKSKNHT HNQ+ KAH+NGIKKPK+ R ST GMDPKFLRNQR+ +K N K
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52
>05_03_0661 - 16726958-16726966,16727133-16727234
Length = 36
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +2
Query: 35 MAKSKNHTNHNQNRKAHRNGIKKPKKVRHESTLGMD 142
MAKSKNHT HNQ+ KAH+NGIKKPK+ R ST G +
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 29.5 bits (63), Expect = 0.56
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 270 YKLKVHFLALASRVAFLSAALNNCLAGLRLPFLQNLWFLRN 148
Y HF A +++L A L C + +P WFLRN
Sbjct: 252 YDKDSHFSASYGVISWLDAGLPPCKLVMGIPLFGRSWFLRN 292
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 98 KKPKKVRHESTLGMDPKFLRNQ-RFCKKG 181
+KP K R L + +F+R+Q + CKKG
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 169 EPLVPQEFRIHAKCGFVSDLLRFFN 95
EPL PQEF + +KC F R++N
Sbjct: 101 EPLEPQEFSVGSKCRFRHKDGRWYN 125
>03_06_0638 +
35222994-35223265,35223521-35223610,35224189-35224349,
35224701-35224770,35224871-35224925,35225413-35225496,
35225960-35225998,35226503-35226549,35226723-35226834
Length = 309
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 36 WPSRRIIQIITKTEKLIEMELKNRR 110
W S+R+++ I ++EK ++ ELK R
Sbjct: 249 WSSKRLVKEIKESEKELDEELKETR 273
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 36 WPSRRIIQIITKTEKLIEMELKNRR 110
WP +I I + E L E +LKNRR
Sbjct: 450 WPGLSVIGNILQQEHLWEYDLKNRR 474
>03_05_0122 - 21025469-21026719
Length = 416
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 157 PQEFRIHAKCGFVSDLLRFFNSISMSFSVLVMICMILRLGHF 32
P I SDLL S++ + SVL I ++ GHF
Sbjct: 33 PSSRPISVSAAAPSDLLASVESVASAASVLAAIVLVHESGHF 74
>11_06_0128 - 20389375-20389781,20389988-20392787
Length = 1068
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = -3
Query: 234 RVAFLSAALNNCLAGLRLPFLQNLWFLRNL 145
RVA L A N L+G PFL NL FLR L
Sbjct: 89 RVAALRMASFN-LSGAISPFLANLSFLREL 117
>10_08_0419 - 17783202-17784938
Length = 578
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +2
Query: 95 IKKPKKVRHE-STLGMDPKFLRN----QRFCKKGNLKPAKQL 205
++K K+ E S +G++P L Q FC KGN+K A ++
Sbjct: 455 VRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEI 496
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 138 WILNS*GTRGSVKKVTLNPPS 200
WI N+ GTR S + V+L+P S
Sbjct: 132 WIANNRGTRWSSRHVSLDPKS 152
>04_04_1466 -
33799104-33799229,33799659-33799669,33800052-33800200,
33800261-33800299,33800690-33800746,33800839-33801628,
33801705-33801980,33802051-33802117,33802211-33802285,
33802618-33802812,33802927-33803076,33803152-33803522,
33804070-33804193,33804246-33804275,33804306-33804417,
33804919-33804985,33805138-33805180,33805768-33805872
Length = 928
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +2
Query: 23 NLSEMAKSKNHTNHNQNRKAHRNGIKKPKKVRHESTLGMDPKFLRNQRFCKKGNL 187
N S M S+ H + N + + +K+PK VR + + ++ + + GN+
Sbjct: 635 NFSNMESSQGHLGKSSNEE---DFVKEPKAVRRKESESSSKRYNDDDKSSMYGNI 686
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 255 HFLALASRVAFLSAALNNCLAGLRLPFLQNLWFLRNLGSMPS 130
H L+L L A L++ + LRLP +L R+L ++PS
Sbjct: 68 HLLSLPDPAPHLLALLSSSSSPLRLPLGFSLSAFRSLCALPS 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,513,015
Number of Sequences: 37544
Number of extensions: 107107
Number of successful extensions: 318
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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