Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_O17
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    25   6.1  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   8.1  
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    25   8.1  

>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 132 LLCSGSTNSKARLTKAVDILIHNKRNTFSIFTFAQKITLNF 10
           +LC    + K R  KA  I  H K+N    +  + K   NF
Sbjct: 117 VLCGNKVDVKERKVKAKAITFHRKKN-LQYYDISAKSNYNF 156


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 20/80 (25%), Positives = 33/80 (41%)
 Frame = +2

Query: 209 TTTKLKVHMKQTKSEEQKIEENIKKLLTLSEPIAEIQVTKKIIERAITGKPLXXXXXXXX 388
           T   L+     + SEE K+E+NI+   ++ E    +Q  K+  E+ +  K          
Sbjct: 9   TLDTLRRRFNDSSSEEDKLEKNIQDETSIKE--VSLQDAKQSDEKGVEEKVFNDESFSID 66

Query: 389 XXXXSILFPEDEAETIKKSK 448
                   PEDE   I K++
Sbjct: 67  VAPK----PEDELSGIVKAR 82


>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 47  LNVFLLLCIKMSTALVRRALEFVDPEQSS 133
           LNV+ L C+     +  + + FV PE+S+
Sbjct: 251 LNVYRLSCLSTDDFINGKGVHFVPPEESA 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,896
Number of Sequences: 5004
Number of extensions: 39823
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)