Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_O17
(583 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC142998-1|AAI42999.1| 492|Homo sapiens asparagine-linked glyco... 31 3.9
AL139082-3|CAI12890.1| 492|Homo sapiens UTP14, U3 small nucleol... 31 3.9
U89277-1|AAC51169.1| 1004|Homo sapiens polyhomeotic 1 homolog pr... 30 6.8
BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein. 30 6.8
BC018007-1|AAH18007.1| 315|Homo sapiens C10orf4 protein protein. 30 6.8
AL157396-1|CAH73836.1| 315|Homo sapiens chromosome 10 open read... 30 6.8
AK090955-1|BAC03556.1| 315|Homo sapiens protein ( Homo sapiens ... 30 6.8
AJ431725-1|CAD24474.1| 276|Homo sapiens FRA10AC1 protein protein. 30 6.8
AJ431724-1|CAD24473.1| 315|Homo sapiens FRA10AC1 protein protein. 30 6.8
AJ431723-1|CAD24472.1| 292|Homo sapiens FRA10AC1 protein protein. 30 6.8
AJ431722-1|CAD24471.1| 313|Homo sapiens FRA10AC1 protein protein. 30 6.8
AJ431721-1|CAD24470.1| 315|Homo sapiens FRA10AC1 protein protein. 30 6.8
AB209063-1|BAD92300.1| 1099|Homo sapiens Polyhomeotic-like prote... 30 6.8
X83928-1|CAA58780.1| 211|Homo sapiens transcription factor TFII... 29 9.1
D63705-1|BAA23620.1| 211|Homo sapiens TFIID subunit p30beta pro... 29 9.1
CR542068-1|CAG46865.1| 211|Homo sapiens TAF11 protein. 29 9.1
BT019405-1|AAV38212.1| 211|Homo sapiens TAF11 RNA polymerase II... 29 9.1
BT019404-1|AAV38211.1| 211|Homo sapiens TAF11 RNA polymerase II... 29 9.1
BC021972-1|AAH21972.1| 211|Homo sapiens TAF11 RNA polymerase II... 29 9.1
AY217767-1|AAO25652.1| 211|Homo sapiens TAF11 RNA polymerase II... 29 9.1
AL033520-1|CAB96725.1| 211|Homo sapiens TAF11 RNA polymerase II... 29 9.1
>BC142998-1|AAI42999.1| 492|Homo sapiens asparagine-linked
glycosylation 11 homolog (S. cerevisiae,
alpha-1,2-mannosyltr protein.
Length = 492
Score = 30.7 bits (66), Expect = 3.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 305 WARRELTIFLYSLQFSALQI*SASCVLLILLLYGLTESLTR 183
W +L F YSL F L + CV L+++L+G+ L R
Sbjct: 8 WCLCKLLRFFYSLFFPGLIVCGTLCVCLVIVLWGIRLLLQR 48
>AL139082-3|CAI12890.1| 492|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog C (yeast) protein.
Length = 492
Score = 30.7 bits (66), Expect = 3.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 305 WARRELTIFLYSLQFSALQI*SASCVLLILLLYGLTESLTR 183
W +L F YSL F L + CV L+++L+G+ L R
Sbjct: 8 WCLCKLLRFFYSLFFPGLIVCGTLCVCLVIVLWGIRLLLQR 48
>U89277-1|AAC51169.1| 1004|Homo sapiens polyhomeotic 1 homolog
protein.
Length = 1004
Score = 29.9 bits (64), Expect = 6.8
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 194 SQLIHTTTKLKVHMKQTKSEEQKIEENIKKLLTLSEP 304
SQL+HT T L++ +Q + ++Q+ ++ + TL+ P
Sbjct: 412 SQLLHTATHLQLAQQQQQQQQQQQQQQQPQATTLTAP 448
>BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.
Length = 1192
Score = 29.9 bits (64), Expect = 6.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 259 EN*REYKKIVNSLRAHR*DTSYKKDYRESNHREASRRKGKGHKESRK 399
E RE + ++ R+ + SYKK+Y+ S R SR K + E K
Sbjct: 286 ERERERHRHRDNRRSPSLERSYKKEYKRSGSRSPSREKKRARWEEEK 332
>BC018007-1|AAH18007.1| 315|Homo sapiens C10orf4 protein protein.
Length = 315
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 313 DTSYKKDYRESNHREASRRKGKGHKESRK 399
++S+KK R S+ EAS++K KGH S+K
Sbjct: 242 ESSHKKS-RLSSAEEASKKKDKGHSSSKK 269
>AL157396-1|CAH73836.1| 315|Homo sapiens chromosome 10 open reading
frame 4 protein.
Length = 315
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 313 DTSYKKDYRESNHREASRRKGKGHKESRK 399
++S+KK R S+ EAS++K KGH S+K
Sbjct: 242 ESSHKKS-RLSSAEEASKKKDKGHSSSKK 269
>AK090955-1|BAC03556.1| 315|Homo sapiens protein ( Homo sapiens
cDNA FLJ33636 fis, clone BRAMY2023115, weakly similar to
PUTATIVE ACID PHOSPHATASE F26C11.1 (EC 3.1.3.2). ).
Length = 315
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 313 DTSYKKDYRESNHREASRRKGKGHKESRK 399
++S+KK R S+ EAS++K KGH S+K
Sbjct: 242 ESSHKKS-RLSSAEEASKKKDKGHSSSKK 269
>AJ431725-1|CAD24474.1| 276|Homo sapiens FRA10AC1 protein protein.
Length = 276
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 313 DTSYKKDYRESNHREASRRKGKGHKESRK 399
++S+KK R S+ EAS++K KGH S+K
Sbjct: 242 ESSHKKS-RLSSAEEASKKKDKGHSSSKK 269
>AJ431724-1|CAD24473.1| 315|Homo sapiens FRA10AC1 protein protein.
Length = 315
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 313 DTSYKKDYRESNHREASRRKGKGHKESRK 399
++S+KK R S+ EAS++K KGH S+K
Sbjct: 242 ESSHKKS-RLSSAEEASKKKDKGHSSSKK 269
>AJ431723-1|CAD24472.1| 292|Homo sapiens FRA10AC1 protein protein.
Length = 292
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 313 DTSYKKDYRESNHREASRRKGKGHKESRK 399
++S+KK R S+ EAS++K KGH S+K
Sbjct: 242 ESSHKKS-RLSSAEEASKKKDKGHSSSKK 269
>AJ431722-1|CAD24471.1| 313|Homo sapiens FRA10AC1 protein protein.
Length = 313
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 313 DTSYKKDYRESNHREASRRKGKGHKESRK 399
++S+KK R S+ EAS++K KGH S+K
Sbjct: 242 ESSHKKS-RLSSAEEASKKKDKGHSSSKK 269
>AJ431721-1|CAD24470.1| 315|Homo sapiens FRA10AC1 protein protein.
Length = 315
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 313 DTSYKKDYRESNHREASRRKGKGHKESRK 399
++S+KK R S+ EAS++K KGH S+K
Sbjct: 242 ESSHKKS-RLSSAEEASKKKDKGHSSSKK 269
>AB209063-1|BAD92300.1| 1099|Homo sapiens Polyhomeotic-like protein
1 variant protein.
Length = 1099
Score = 29.9 bits (64), Expect = 6.8
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 194 SQLIHTTTKLKVHMKQTKSEEQKIEENIKKLLTLSEP 304
SQL+HT T L++ +Q + ++Q+ ++ + TL+ P
Sbjct: 507 SQLLHTATHLQLAQQQQQQQQQQQQQQQPQATTLTAP 543
>X83928-1|CAA58780.1| 211|Homo sapiens transcription factor TFIID
subunit TAFII28 protein.
Length = 211
Score = 29.5 bits (63), Expect = 9.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 191 SSQLIHTTTKLKVHMKQTKSEEQKIEEN-IKKLLTLSEPIAEIQVTK 328
SS L KLK+ K+ K ++QK++E+ I+K+ L +E Q+ +
Sbjct: 74 SSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120
>D63705-1|BAA23620.1| 211|Homo sapiens TFIID subunit p30beta
protein.
Length = 211
Score = 29.5 bits (63), Expect = 9.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 191 SSQLIHTTTKLKVHMKQTKSEEQKIEEN-IKKLLTLSEPIAEIQVTK 328
SS L KLK+ K+ K ++QK++E+ I+K+ L +E Q+ +
Sbjct: 74 SSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120
>CR542068-1|CAG46865.1| 211|Homo sapiens TAF11 protein.
Length = 211
Score = 29.5 bits (63), Expect = 9.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 191 SSQLIHTTTKLKVHMKQTKSEEQKIEEN-IKKLLTLSEPIAEIQVTK 328
SS L KLK+ K+ K ++QK++E+ I+K+ L +E Q+ +
Sbjct: 74 SSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120
>BT019405-1|AAV38212.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 28kD
protein.
Length = 211
Score = 29.5 bits (63), Expect = 9.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 191 SSQLIHTTTKLKVHMKQTKSEEQKIEEN-IKKLLTLSEPIAEIQVTK 328
SS L KLK+ K+ K ++QK++E+ I+K+ L +E Q+ +
Sbjct: 74 SSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120
>BT019404-1|AAV38211.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 28kD
protein.
Length = 211
Score = 29.5 bits (63), Expect = 9.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 191 SSQLIHTTTKLKVHMKQTKSEEQKIEEN-IKKLLTLSEPIAEIQVTK 328
SS L KLK+ K+ K ++QK++E+ I+K+ L +E Q+ +
Sbjct: 74 SSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120
>BC021972-1|AAH21972.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 28kD
protein.
Length = 211
Score = 29.5 bits (63), Expect = 9.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 191 SSQLIHTTTKLKVHMKQTKSEEQKIEEN-IKKLLTLSEPIAEIQVTK 328
SS L KLK+ K+ K ++QK++E+ I+K+ L +E Q+ +
Sbjct: 74 SSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120
>AY217767-1|AAO25652.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 28kD
protein.
Length = 211
Score = 29.5 bits (63), Expect = 9.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 191 SSQLIHTTTKLKVHMKQTKSEEQKIEEN-IKKLLTLSEPIAEIQVTK 328
SS L KLK+ K+ K ++QK++E+ I+K+ L +E Q+ +
Sbjct: 74 SSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120
>AL033520-1|CAB96725.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding proteinonent, Christmas disease, hemo
protein.
Length = 211
Score = 29.5 bits (63), Expect = 9.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 191 SSQLIHTTTKLKVHMKQTKSEEQKIEEN-IKKLLTLSEPIAEIQVTK 328
SS L KLK+ K+ K ++QK++E+ I+K+ L +E Q+ +
Sbjct: 74 SSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,242,631
Number of Sequences: 237096
Number of extensions: 1331799
Number of successful extensions: 5454
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5454
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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