Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_O16
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 267 8e-73
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 231 5e-62
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 118 5e-28
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 95 8e-21
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 93 2e-20
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 91 2e-19
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 87 2e-18
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 82 6e-17
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 79 7e-16
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 58 1e-15
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 75 7e-15
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 74 2e-14
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 68 1e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 67 2e-12
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 66 5e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 64 1e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 58 8e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 55 1e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 53 4e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 51 1e-07
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 43 3e-05
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 43 3e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.020
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 33 0.035
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 32 0.081
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po... 29 0.57
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.3
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 2.3
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 27 3.1
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 27 3.1
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 27 3.1
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 4.0
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 5.3
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 26 5.3
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 26 5.3
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 5.3
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 25 7.1
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 25 7.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 9.3
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 25 9.3
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.3
SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 9.3
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 9.3
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 267 bits (655), Expect = 8e-73
Identities = 120/165 (72%), Positives = 146/165 (88%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFM 183
R L +++FVLDEADEMLSRGFKDQI+D+F++L QV+LLSATMP DVLEV+ FM
Sbjct: 155 RALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFM 214
Query: 184 RDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWL 363
RDP+RILV+K+ELTLEGIKQFY+A+E EEWKL+TLCDLY+T+++ QAVIFCNTRRKVDWL
Sbjct: 215 RDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWL 274
Query: 364 TESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 498
TE + ERDFTVS+MHGDMDQ +R+ +M +FRTGSSR+LITTDLLA
Sbjct: 275 TEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLA 319
Score = 60.5 bits (140), Expect = 2e-10
Identities = 29/47 (61%), Positives = 31/47 (65%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINFVTEAD 640
RGIDVQQVS VINYDLP NRENYIH ++INFVT D
Sbjct: 320 RGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDD 366
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 231 bits (566), Expect = 5e-62
Identities = 101/165 (61%), Positives = 138/165 (83%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFM 183
R LR +K+ +LDEADE+L++GFK+QI+D+++ L QV+++SAT+P DVLE++ F
Sbjct: 157 RNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFT 216
Query: 184 RDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWL 363
+PVRILV+++ELTLEG+KQ++IA+E EEWK +TLCDLYDTL+I QAVIFCN+RRKVDWL
Sbjct: 217 TNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWL 276
Query: 364 TESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 498
TE M E +FTV++MHG+M Q+ER+ IM+ FR G+SRVLI TD+ A
Sbjct: 277 TEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWA 321
Score = 66.5 bits (155), Expect = 3e-12
Identities = 31/49 (63%), Positives = 32/49 (65%)
Frame = +2
Query: 494 WLRGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINFVTEAD 640
W RGIDVQQVS VINYDLP NRENYIH +AINFVT D
Sbjct: 320 WARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNED 368
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 118 bits (285), Expect = 5e-28
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEMLSR-GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCF 180
R L A IK+FVLDEAD ML + G DQ + +L + Q++L SAT + V + + F
Sbjct: 248 RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERF 307
Query: 181 MRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDW 360
+ I ++ EEL++EGIKQ Y+ + EE K L +LY L+I Q++IFC + +
Sbjct: 308 APNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEE 367
Query: 361 LTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 498
+ M TV+ + G+++ +R+ IM FR G+S+VL+TT+++A
Sbjct: 368 IARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIA 413
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNR------ENYIHXXXXXXXXXXXXLAINFV 628
RGIDV QV+ V+NYD+P ++ + Y+H ++INFV
Sbjct: 414 RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 462
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 95.1 bits (226), Expect = 8e-21
Identities = 53/163 (32%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Frame = +1
Query: 10 LRASTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMR 186
L+ +++K FVLDE D++L S + I +VF+ QV++ SAT+ +++ + + FM+
Sbjct: 193 LKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQ 252
Query: 187 DPVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWL 363
+P+ I V E +LTL G++Q Y+ +E E+ K + DL D+L Q VIF + + + L
Sbjct: 253 NPLEIYVDDETKLTLHGLQQHYVKLE-EKAKNRKINDLLDSLEFNQVVIFVKSVSRANEL 311
Query: 364 TESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 492
+ E +F +HG + Q ER + F+ R+ + TD+
Sbjct: 312 DRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDV 354
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINF 625
RGID+++V+ VINYD+P + ++Y+H LAI F
Sbjct: 357 RGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITF 398
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 93.5 bits (222), Expect = 2e-20
Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
Frame = +1
Query: 19 STIKLFVLDEADEMLSRGFKDQIHDVFK---MLSADV-QVILLSATMPDDVLEVSRCFMR 186
+ IK VLDEAD ML GF+ QI + + M S + Q ++ SAT P D+ ++R F++
Sbjct: 328 ANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLK 387
Query: 187 DPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI-AQAVIFCNTRRKVDWL 363
D V + V + T E I Q + +E E K L D+ TL +IF T+R D L
Sbjct: 388 DYVFLSVGRVGSTSENITQKVVHVEDSE-KRSYLLDILHTLPPEGLTLIFVETKRMADTL 446
Query: 364 TESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 486
T+ + +F +++HGD QRERE + FR+G + +++ T
Sbjct: 447 TDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVAT 487
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIH 574
RG+D+ V+ VINYDLPT+ ++Y+H
Sbjct: 492 RGLDIPNVTHVINYDLPTDIDDYVH 516
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 90.6 bits (215), Expect = 2e-19
Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Frame = +1
Query: 25 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 204
+ VLDEAD ML GF+ QI + + D Q ++ SAT P +V ++R ++ D +++
Sbjct: 270 VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVT 329
Query: 205 VQKEELTL-EGIKQFYIAIELEEWKLETLCDLYDTLSIA--QAVIFCNTRRKVDWLTESM 375
V +L IKQ ++ + + D+ + L + +IF T+R D +T +
Sbjct: 330 VGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFL 389
Query: 376 HERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 492
+ + A+HGD Q ER+ ++ +FRTG S +++ TD+
Sbjct: 390 RQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDV 428
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIH 574
RGIDV+ ++ V NYD P N E+Y+H
Sbjct: 431 RGIDVKGITHVFNYDFPGNTEDYVH 455
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 87.4 bits (207), Expect = 2e-18
Identities = 52/154 (33%), Positives = 79/154 (51%)
Frame = +1
Query: 34 FVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQK 213
FV+DEAD++LS F I + + Q+ L SAT P V + P I +
Sbjct: 190 FVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINLM- 248
Query: 214 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFT 393
+ELTL G+ Q+Y ++ E K+ L L+ L I Q++IFCN+ +V+ L + + E ++
Sbjct: 249 DELTLRGVTQYYAFVD-ESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYS 307
Query: 394 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 495
H M Q R + FR G R L+ +DLL
Sbjct: 308 CFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLL 341
Score = 49.2 bits (112), Expect = 5e-07
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINFVTEADR 643
RGID+Q V+ VIN+D P N E Y+H LAI+F++ ADR
Sbjct: 343 RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADR 390
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 82.2 bits (194), Expect = 6e-17
Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Frame = +1
Query: 37 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE 216
VLDEAD M GF+ Q+ + + D Q +L SAT P + ++R ++ PV I V
Sbjct: 573 VLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGR 632
Query: 217 ELTLEGIKQFYIAIELEEWK----LETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHER 384
+ ++Q + + EE K LE L +LY+ + ++F + + D L + +R
Sbjct: 633 SVVASEVEQI-VEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKR 691
Query: 385 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 498
+T +++HG DQ +R+ + ++ G VLI T ++A
Sbjct: 692 GYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVA 729
Score = 41.5 bits (93), Expect = 1e-04
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINFVT 631
RG+DV+ + V+NYD P + E+Y+H +A+ F+T
Sbjct: 730 RGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFIT 773
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 78.6 bits (185), Expect = 7e-16
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 2/166 (1%)
Frame = +1
Query: 7 GLRASTIKLFVLDEADEMLSRGFKDQI-HDVFKMLSADVQVILLSATMPDDVLEVSRCFM 183
GL ++ FV+DEAD + GF +Q H + S+++ L SAT+P V E+++
Sbjct: 184 GLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVT 243
Query: 184 RDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIA-QAVIFCNTRRKVDW 360
DP+RI+V ++ + I Q + + + K+ L + + + VIF +
Sbjct: 244 VDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKA 303
Query: 361 LTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 498
L + + V +HG++ Q +RE + +FR G VLI TDLLA
Sbjct: 304 LYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLA 349
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINFVTEAD 640
RGID V VIN+D P + +YIH A+ F T+ D
Sbjct: 350 RGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKED 396
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 57.6 bits (133), Expect(2) = 1e-15
Identities = 27/102 (26%), Positives = 53/102 (51%)
Frame = +1
Query: 10 LRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRD 189
L S+I+ V DEAD + GF Q+ ++ L Q +L SAT+P +++ ++ ++D
Sbjct: 209 LELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQD 268
Query: 190 PVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 315
PV + + E ++ + +++ E + LC L D + +
Sbjct: 269 PVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKL 310
Score = 40.7 bits (91), Expect(2) = 1e-15
Identities = 16/56 (28%), Positives = 35/56 (62%)
Frame = +1
Query: 325 VIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 492
++F T+ V++++E + + ++VS ++G +DQ R + FR G + +L+ TD+
Sbjct: 350 LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDV 405
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINFVTEAD 640
RGID+ ++ VINYD P + ++H A + V D
Sbjct: 408 RGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAED 454
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 75.4 bits (177), Expect = 7e-15
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 2/166 (1%)
Frame = +1
Query: 1 ARGLRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCF 180
++G I++ V+DEAD ML GF D+++++ + Q +L SATM D V ++ R
Sbjct: 398 SQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLS 457
Query: 181 MRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLY--DTLSIAQAVIFCNTRRKV 354
+ PVR+ V ++ T + + Q ++ + + L +Y L + +IF ++
Sbjct: 458 LNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFA 517
Query: 355 DWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 492
+ + +HG + Q +R + FR G L+ TD+
Sbjct: 518 HKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDV 563
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINFVTEADR 643
RGID++ + VINY+ P E Y+H AI E DR
Sbjct: 566 RGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDR 613
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 73.7 bits (173), Expect = 2e-14
Identities = 43/165 (26%), Positives = 78/165 (47%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFM 183
+G +K ++DEAD +L F I + K++ + + +L SATM V ++ R +
Sbjct: 183 KGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASL 242
Query: 184 RDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWL 363
PVR+ V + T++ + Q Y+ + K L L + L+ +IF T L
Sbjct: 243 HQPVRVAVSSKFSTVDTLIQRYLFFPFKH-KDTYLVYLVNELAGNSIIIFARTVNDTQRL 301
Query: 364 TESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 498
+ F+ +HG + Q R + +F++G+ L+ TD+ A
Sbjct: 302 AILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAA 346
Score = 39.9 bits (89), Expect = 3e-04
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINFVTEAD 640
RG+D+ V VINYD+PT+ + YIH +I VT+ D
Sbjct: 347 RGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYD 393
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 67.7 bits (158), Expect = 1e-12
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 4/164 (2%)
Frame = +1
Query: 19 STIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVR 198
S +++ +LDEAD +L GF+ + + L Q +L SAT V +++R +++P
Sbjct: 184 SGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDF 243
Query: 199 ILVQKEEL--TLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTES 372
I V + + T + QFY+ + L E KL+ L T + ++F ++ ++V ++ E+
Sbjct: 244 ISVHENDTSSTPSNLNQFYLTVPLTE-KLDILFGFIRTHLKFKTIVFLSSCKQVRFVYET 302
Query: 373 MHERDFTVSA--MHGDMDQREREVIMRQFRTGSSRVLITTDLLA 498
+S +HG Q R + +F + VL TD++A
Sbjct: 303 FRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVA 346
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIH 574
RG+D V VI D P + + YIH
Sbjct: 347 RGLDFPAVDWVIQLDAPEDVDTYIH 371
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 67.3 bits (157), Expect = 2e-12
Identities = 44/169 (26%), Positives = 87/169 (51%), Gaps = 4/169 (2%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEMLSRGFKDQIHDVFKML-SADVQVILLSATMPDDVLEVSRCF 180
+G ++ V+DEAD +L GF+D++ + K+L S + Q +L SAT V +++R
Sbjct: 230 KGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARIS 289
Query: 181 MR-DPVRILVQ--KEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRK 351
++ P+ + V K T+EG++Q Y+ ++ ++ L L L + ++F ++
Sbjct: 290 LKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLK-KKVIVFMSSCAS 348
Query: 352 VDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 498
V ++ E ++ D V +HG Q+ R +F +L+ T++ A
Sbjct: 349 VKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAA 397
Score = 29.5 bits (63), Expect = 0.43
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIH 574
RG+D+ V ++ YD P + +YIH
Sbjct: 398 RGLDIPAVDWIVQYDPPDDPRDYIH 422
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 65.7 bits (153), Expect = 5e-12
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Frame = +1
Query: 19 STIKLFVLDEADEMLSRGFKDQIHDVFKML-----SADVQVILLSATMPDDVLEVSRCFM 183
S + VLDEAD ML GF+ I ++ + Q + SAT P+ V ++ F+
Sbjct: 308 SQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFL 367
Query: 184 RDPVRILVQKEELTL-EGIKQFYIAIELEEWKLETLCDLYDT-LSIA---QAVIFCNTRR 348
+DPV+I + +EL + I Q ++ K L +L LS ++ +
Sbjct: 368 KDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYK 427
Query: 349 KVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 498
K E R + V +HGDM Q R + F++G VL+ TD+ A
Sbjct: 428 KEAARVEGTLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAA 477
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINFVTEADR 643
RG+D+ +V VIN P E+Y+H AI F T D+
Sbjct: 478 RGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDK 525
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 64.5 bits (150), Expect = 1e-11
Identities = 49/171 (28%), Positives = 91/171 (53%), Gaps = 9/171 (5%)
Frame = +1
Query: 7 GLRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA--DVQVILLSATMPDDVLEVSRCF 180
GLR IK V+DEAD +LS F D + D F +L A D Q +L +AT+ D + ++
Sbjct: 150 GLRR--IKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQLKYQP 207
Query: 181 MRD---PVRIL-VQKEELTLEG-IKQFYIAI--ELEEWKLETLCDLYDTLSIAQAVIFCN 339
++ P+ + V+ + +++ ++Q YI + ++ E L L + + A+IF N
Sbjct: 208 QKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVHLLTIPENAK-KSAIIFVN 266
Query: 340 TRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 492
R + + + + V+ +H +M QRER + +FR ++++L+ TD+
Sbjct: 267 RTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDV 317
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINFVTEAD 640
RG+D+ V VIN+DLP + ++YIH +I+ VTE D
Sbjct: 320 RGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERD 366
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 58.4 bits (135), Expect = 8e-10
Identities = 38/172 (22%), Positives = 82/172 (47%), Gaps = 20/172 (11%)
Frame = +1
Query: 37 VLDEADEMLSRGFKDQIHDVFKML-------------------SADVQVILLSATMPDDV 159
V+DEAD ML GF+D ++ + L S+ Q I+ SAT+P V
Sbjct: 404 VMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRV 463
Query: 160 LEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVI-FC 336
+++ ++ +PV + + ++ ++Q I + K + ++ ++ + +I F
Sbjct: 464 ANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFV 523
Query: 337 NTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 492
N +R ++ + + ++ + +HG Q +RE + Q R ++ +L+ TD+
Sbjct: 524 NLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDI 575
Score = 34.3 bits (75), Expect = 0.015
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINFVTEAD 640
RGID+ VS V+NY++ + E+Y H AI F+ D
Sbjct: 578 RGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPED 624
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 54.8 bits (126), Expect = 1e-08
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 8/164 (4%)
Frame = +1
Query: 25 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR-CFMRDPVRI 201
+++ +LDEAD ++ GF+ + + L + L SATM D V + +R+ VR+
Sbjct: 155 LEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRV 214
Query: 202 LVQKEELTLEGIKQFYIAIEL----EEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTE 369
V ++ +AI+ +K++ + L T+ +A++F ++ V++
Sbjct: 215 SVTVTSKKIDTRTPSSLAIQSLVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNS 274
Query: 370 SM--HERDFTVSAMHGDMDQREREVIMRQFRTGSSR-VLITTDL 492
++ F + A+HG Q R +F+ + + VL TTD+
Sbjct: 275 LFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDI 318
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 52.8 bits (121), Expect = 4e-08
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 8/173 (4%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEMLSRGFKDQIHDVFK-MLSADVQVILLSATMPDDVLEVSRCF 180
R L + + F+LDEAD ++ GF + I ++ + + + + + SATMP V V R
Sbjct: 182 RILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGI 241
Query: 181 MRDPVRI---LVQKEELTLEGIKQFYIAIELEE---WKLETLCDLYDTLSIAQAVIFCNT 342
+ ++ L E T E + QF I +L++ L L L + ++ ++F T
Sbjct: 242 LGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFSSSLSLLQQLTSSNPSSRIIVFLPT 301
Query: 343 RRKVDWLTESMHER-DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 498
VD++ + +H + +R I FR S +L TD++A
Sbjct: 302 ISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVA 354
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIH 574
RG+D ++ V+ P+N ++YIH
Sbjct: 355 RGMDFPNITQVVQITGPSNTDDYIH 379
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 51.2 bits (117), Expect = 1e-07
Identities = 36/155 (23%), Positives = 71/155 (45%)
Frame = +1
Query: 25 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 204
+K V+DEAD MLS G+ + + + + L Q L+SAT+ ++ + + R+P IL
Sbjct: 165 LKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPF-IL 223
Query: 205 VQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHER 384
K++ + Q+ + ++ L L L + +IF N + L + +
Sbjct: 224 AVKDKEASGKLTQYVVKCSEQDKFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQF 283
Query: 385 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTD 489
++ ++ R I+ Q+ G +++I TD
Sbjct: 284 GLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATD 318
Score = 42.7 bits (96), Expect = 4e-05
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINFV 628
RG+D + V+CV+N+D+P+N ++YIH A++FV
Sbjct: 388 RGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFV 430
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 43.2 bits (97), Expect = 3e-05
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Frame = +1
Query: 37 VLDEADEMLSRG-FKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQK 213
V+DEA +L+ G ++ + ++ + LLSAT P + V+R +L ++
Sbjct: 1320 VIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVARQTFCTNFYVL-RE 1378
Query: 214 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI---AQAVIFCNTRRKVDWLTESMHER 384
E I F + E+ L+ + T +A+IFC T++ V+++ +H+
Sbjct: 1379 TSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQS 1438
Query: 385 DF----TVSAMHGDMDQREREVIMRQFR--TGSSRVLITT 486
D V+ GD+ ER++ FR G +R++I T
Sbjct: 1439 DLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIAT 1478
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 43.2 bits (97), Expect = 3e-05
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Frame = +1
Query: 37 VLDEADEMLSRG-FKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQK 213
V+DEA +L+ G ++ + ++ + LLSAT P + V+R +L ++
Sbjct: 1320 VIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVARQTFCTNFYVL-RE 1378
Query: 214 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI---AQAVIFCNTRRKVDWLTESMHER 384
E I F + E+ L+ + T +A+IFC T++ V+++ +H+
Sbjct: 1379 TSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQS 1438
Query: 385 DF----TVSAMHGDMDQREREVIMRQFR--TGSSRVLITT 486
D V+ GD+ ER++ FR G +R++I T
Sbjct: 1439 DLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIAT 1478
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.020
Identities = 35/172 (20%), Positives = 79/172 (45%), Gaps = 21/172 (12%)
Frame = +1
Query: 46 EADEMLSRGFKDQIHDVFKM-LSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEEL 222
+ D+ +S F I + L + +Q ++ SAT+ D +++ + +P +LVQ +++
Sbjct: 327 DLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDM 386
Query: 223 TLEGIKQ-------FYIAIELEEWKLET-------LCDLYDTLSIAQAVIFCNTRR---K 351
++ + F + L+E+ + L L + ++ + F + +
Sbjct: 387 EVDDGGEIEDDAIVFSVPPTLQEYHVSVSSEKPILLYHLIHSKNLTNILCFVKSNEAAAR 446
Query: 352 VDWLTESMHE---RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 498
+ L E +HE + F+ + + ER+ I+ +F TG +L+ +DL+A
Sbjct: 447 LHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMA 498
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIH 574
RGIDV VINYD P + +Y+H
Sbjct: 499 RGIDVANTQNVINYDPPLSVRSYVH 523
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 25 IKLFVLDEADEMLSRGFKDQIHDVFKMLS 111
++ V+DEAD +L + F+D + V +S
Sbjct: 286 LRYMVIDEADRLLDQSFQDWVDTVMMEIS 314
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 33.1 bits (72), Expect = 0.035
Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 24/182 (13%)
Frame = +1
Query: 25 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVILLSATMPDDVLEVSRCFMR-- 186
IK VLDEAD +L + +++ + ++L + Q + SAT + + + + M+
Sbjct: 269 IKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGN 328
Query: 187 ------DPVRILVQKEELT-----LEGIKQFYIAIELEEWKLETLC---DLYDTLSI--- 315
P+ ++++ L+ Q +A + E +E DLY I
Sbjct: 329 ITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRY 388
Query: 316 -AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 492
+ ++F N + +T ++E +H +DQ++R + +F+ VL+ TD+
Sbjct: 389 PGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDV 448
Query: 493 LA 498
A
Sbjct: 449 AA 450
Score = 29.5 bits (63), Expect = 0.43
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIH 574
RGID+ V+ VI+Y +P + Y+H
Sbjct: 451 RGIDIPSVTHVIHYHVPHTADMYVH 475
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 31.9 bits (69), Expect = 0.081
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 10 LRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD-DVLEVSRCFMR 186
L S ++ VLDE D ++ GF++ + + L + +I ++P V + M+
Sbjct: 290 LDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMK 349
Query: 187 DPVRIL 204
D V+ L
Sbjct: 350 DTVKRL 355
Score = 31.9 bits (69), Expect = 0.081
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 500 RGIDVQQVSCVINYDLPTNRENYIHXXXXXXXXXXXXLAINFV 628
RG+D+ V V+ YD P + ++Y+H AI F+
Sbjct: 508 RGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFL 550
>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 167
Score = 29.1 bits (62), Expect = 0.57
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 131 YFLLQCLMMYWKCLVAS*EILYGSLSKRRSLHWKVLNNSTLPLS*K 268
YFL CL+ +W +V +Y + K R H K+ ++ LPL K
Sbjct: 73 YFLASCLLTFWSSVVKG-STVYVATKKER--HIKISADTFLPLKNK 115
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.3
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Frame = -1
Query: 497 ASRSVVMSTRDEPVRNCLMITSRSRWSMSPCMADTVKSRSCIDSVSQSTLRRVLQKITAC 318
+S SV +S + + +TS + S+S + T S+ + S S ST T+
Sbjct: 151 SSTSVEVSISSSSLSSSDPLTSSTFSSLS---SSTSSSQPSVSSTSSSTFSSAAPTSTSS 207
Query: 317 AI---ESVXXXXXX--XXXXXXXXSMAM*NCLIPSSVSSSFWTRIRTGSLMKQRDTSNTS 153
+ SV S ++ IPS+ SSS T + SL +S S
Sbjct: 208 SYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSST---SSSLSSSSSSSTAS 264
Query: 152 SGIVAESKIT*TSADNILKTSWI*SLNPLDNISSASSSTKS 30
S + S I+ +S+ + TS +++ + SS+ +ST S
Sbjct: 265 SSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSS 305
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 181 MRDPVRILVQKEELTLEGIKQFYIAIELEEW 273
+ DP R V+KE+LT G+ + A + + W
Sbjct: 65 LTDPARNFVEKEDLTALGVNVYNNADDWKNW 95
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 483 HRPTGSAVSTCSKSL-VSSIMIYPLIAKTTFIESEEVVVSAVTDLPSTLSRKR 638
HR G + T + + S+++ P+I + F+ +V +A+ + S L++KR
Sbjct: 699 HRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKR 751
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 483 HRPTGSAVSTCSKSL-VSSIMIYPLIAKTTFIESEEVVVSAVTDLPSTLSRKR 638
HR G + T + + S+++ P+I + F+ +V +A+ + S L++KR
Sbjct: 699 HRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKR 751
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 561 KTTFIESEEVVVSAVTDLPSTLSRKRTG 644
++TFIES ++ + T PS++S+ +G
Sbjct: 132 ESTFIESHQIYIQGETKSPSSVSQSLSG 159
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 52 DEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 162
+EMLS +H V+ S + + LS+T P+ +L
Sbjct: 299 EEMLSPSSLYTLHQVYTATSESINIKTLSSTTPEYIL 335
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 5.3
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = -3
Query: 252 NVELFNTFQCKLLLLDKDPYRISHEATRHFQYIIRHCSRK*NNLNISRQHLENIMDLIFE 73
NVE N + L K+ ++ E R ++++ CS + +N+ Q +N + +FE
Sbjct: 281 NVETTNLKKYSSFLALKEAVSMTSEQLRVLEHLLSECS---HEINVLSQQSKN-FNGVFE 336
Query: 72 SSR*HFISFI*HE 34
SS I+ + H+
Sbjct: 337 SSYQPLINDLDHQ 349
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 296 YMTHSLLHRLLFSATPVVR*TG*PSLCMSATSPCRPCTVTWTS 424
+ TH L +L F P + + S+ +S+TSP P T+ W +
Sbjct: 190 FKTHFLFSQLSFECIPHLSDS---SIQLSSTSPVIPFTLKWNN 229
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 180 EATRHFQYIIRHCSRK*NNLNISRQHLENIMD 85
E FQ I++H S N L R+HL N +D
Sbjct: 139 EEIERFQAILKHPSFVSNPLETVREHLGNSLD 170
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEM 60
R + AST K+ +LDEAD M
Sbjct: 114 RQIFASTFKMIILDEADAM 132
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 265 EEWKLETLCDLYDTLSIAQAVI--FCNTRRKVDW 360
+EWKL+ + D YD ++ QAV R + DW
Sbjct: 143 DEWKLDPVYDYYD-YTLVQAVYSSLVKHREQKDW 175
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 337 NTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRV 474
N ++ TES +R V + D + +R+ R+F G RV
Sbjct: 25 NNKKSRTRSTESHEDRQAKVQKIQSDFNLFDRQFTKRKFDVGGRRV 70
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 9.3
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = -1
Query: 233 PSSVSSSFWTRIRTGSLMKQRDTSNTSSGIVAESKIT*TSADNILKTSWI*SLNPLDNIS 54
PSS SSS + + S +S++SS + S + +S+ + +S S P+ + +
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSST 214
Query: 53 SASSSTKS 30
S+S S+ S
Sbjct: 215 SSSHSSSS 222
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 181 MRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQA 324
M++P+R+ + EE T++ +LEE + E L +T+ A
Sbjct: 136 MKEPIRLFGESEEATIQRYYSLLKYKKLEEIENELLTKGVETIDFEHA 183
>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +1
Query: 37 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE 216
V+DE + LS +DQ++D+ K S+ + I + + EVS + D V + V +
Sbjct: 25 VIDERTKRLSAHLRDQVNDLTKSSSSKEEGI-----ADNSLKEVSSSEVSDNVGMEVDQP 79
Query: 217 ELTLEG 234
+++ G
Sbjct: 80 KVSTSG 85
>SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 186
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 485 PTYWLRGIDVQQVSCVINYDLPTNRENYI 571
P YW GI + V VI + N +N+I
Sbjct: 112 PLYWGMGIATECVGRVIEFGSENNIQNFI 140
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 163 EVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLY 300
+ S+ FM D + +E +L G+K+FY LE +ETL +Y
Sbjct: 1088 KTSKVFMNDSSVL----KEASLSGLKEFYFCEPLE--CVETLVQIY 1127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,595,713
Number of Sequences: 5004
Number of extensions: 52444
Number of successful extensions: 208
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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