Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_O16
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       72   6e-15
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.1  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    23   3.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    23   3.3  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    23   3.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 71.7 bits (168), Expect = 6e-15
 Identities = 45/171 (26%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
 Frame = +1

Query: 10  LRASTIKLFVLDEADEMLSRGFKDQI-----HDVFKMLSADVQVILLSATMPDDVLEVSR 174
           ++ S+++  VLDEAD ML  GF   I     H+    L  + Q ++ SAT PD+V  ++R
Sbjct: 343 VKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLG-ERQTLMFSATFPDEVQHLAR 401

Query: 175 CFMRDPVRILVQKEELTLEGIKQFYIAIELEEWK---LETLCDLYDTLSIAQAVIFCNTR 345
            F+ + + + V         ++Q +  +   + K    E L    D+ ++   ++F   +
Sbjct: 402 RFLNNYLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGTLGGTLVFVEMK 461

Query: 346 RKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 498
           +K D++   + E ++  +++HGD  QR+RE  +  F++G   +L+ T + A
Sbjct: 462 KKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAA 512



 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +2

Query: 500 RGIDVQQVSCVINYDLPTNRENYIH 574
           RG+D++ VS VINYDLP   + Y+H
Sbjct: 513 RGLDIKNVSHVINYDLPKGIDEYVH 537


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 453 PYWFVSCAHHHRPTGSAVSTCSKSLVSSIM 542
           PY   + AHHH     AV+  +    SS++
Sbjct: 90  PYVSAAAAHHHHQQQQAVAAAAFGATSSMV 119


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +3

Query: 459 WFVSCAHHHRPTGSAVSTCSKSLVSSIMIYPLIAK 563
           WF++C H         S   +  V ++++ P I +
Sbjct: 12  WFIACTHSFPGAHDEDSKEERKNVDTVLVLPSIER 46


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +3

Query: 459 WFVSCAHHHRPTGSAVSTCSKSLVSSIMIYPLIAK 563
           WF++C H         S   +  V ++++ P I +
Sbjct: 12  WFIACTHSFPGAHDEDSKEERKNVDTVLVLPSIER 46


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +3

Query: 459 WFVSCAHHHRPTGSAVSTCSKSLVSSIMIYPLIAK 563
           WF++C H         S   +  V ++++ P I +
Sbjct: 12  WFIACTHSFPGAHDEDSKEERKNVDTVLVLPSIER 46


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 137 LLQCLMMYWKCLVAS*EILYGSLSKRRSLHWKVLNN 244
           ++ C M  +  ++ +  I Y  +S R  L W   NN
Sbjct: 68  VMSCWMNVYYIVILAWAIFYFFMSMRSELPWGSCNN 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,992
Number of Sequences: 438
Number of extensions: 3481
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)