Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_O14
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 31 0.059
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 29 0.42
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 0.55
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 1.3
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 27 1.3
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 27 1.7
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 2.2
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 2.2
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 3.0
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 3.9
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo... 25 3.9
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom... 25 5.2
SPAC167.04 |pam17||presequence translocase-associated motor subu... 25 5.2
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 6.8
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm... 25 6.8
SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.8
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch... 24 9.0
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 31.5 bits (68), Expect = 0.059
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 62 DIIIPCSKRTGGRRSIFSSS--ICDLFIYSFCSHIIPHTLH-PSF 187
D ++PC K+TG I S + DL + S HII LH P F
Sbjct: 114 DAVVPCKKQTGYHPWIAQSGTLVADLLMCSGADHIITMDLHDPQF 158
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 28.7 bits (61), Expect = 0.42
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 75 PVLNALGVGAVFFLLPYVISSFTPFALILFLTHFIHPF 188
P GVG V L Y +S F+ A+ +F TH+ P+
Sbjct: 8 PFKGGFGVGRVPTSLYYSLSDFSLSAISIFPTHYDQPY 45
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 0.55
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 146 FCSHIIPHTLHPSFFW-PSSTCPSFH--INIFITILSTCASSL 265
FCS ++ + P+FFW PSF +N + L +C S +
Sbjct: 24 FCSGLLTQYIQPTFFWFAHDETPSFKWVLNAYHERLRSCTSCI 66
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 27.1 bits (57), Expect = 1.3
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 393 LSKKCY*SDTH*PCKLLL*KFERGASGRKLKGN-RLTTYRHVMRREEAHVDKIVMNILMW 217
L+ CY +T + +F + RKLK N LTTY ++++ DK +N + W
Sbjct: 465 LNSICYTGNTESRANIREYEFYLSTNSRKLKFNILLTTYEYILK------DKQELNNIRW 518
Query: 216 KDGQVEEGQK 187
+ ++E +
Sbjct: 519 QYLAIDEAHR 528
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 27.1 bits (57), Expect = 1.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 281 YVVKRFPFNFLPLAPLSNF 337
Y++K++PF +PL PL F
Sbjct: 330 YLMKKYPFRRVPLIPLKKF 348
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 149 CSHIIPHTLHPSFFWPSSTCPSFHINIFITI--LSTCASSLLITCL 280
C ++P L P+F+ +T P I T+ L C +S+ + C+
Sbjct: 202 CRLVLPSILSPAFYSIRATHPQHFIRFIHTLSSLIKCTTSVHLICM 247
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 119 SICDLFIYSFCSHIIPHTLHPSFFWPSSTCPSFHINIFITILSTCASSLLIT 274
S+ +LF+ H HT HP + TC +I I ++I+S S L T
Sbjct: 35 SLTNLFLIQKLFHA-NHTQHPLKKYFGETCLLEYIQIILSIVSAALSFYLDT 85
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +2
Query: 68 IIPCSKRTGGRRSIFSSSICDLFIYSFCSHIIPHTLHPSFFWPSSTCPSFHINIFITILS 247
IIP R+ G+R+I + ++ +P+ FFW +S P + I I + I
Sbjct: 2130 IIPAFYRSLGKRNIVIWFFISQILINYWL-AVPYGQAWRFFWNTSNTPLWSIIILLLIFF 2188
Query: 248 TCASSLLITCLYVV 289
++L++ + ++
Sbjct: 2189 IVVWAVLLSVIKIL 2202
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 196 FLYLSILPH*YIHYYFVNM--CFLSSHNMPIRCQTI 297
+L+L L YIHYY +M F+ S ++P++ + +
Sbjct: 682 YLHLGKLSENYIHYYVDSMYALFIYSTDIPLKAEPL 717
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 3.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 69 SFPVLNALGVGAV-FFLLPYVISSFTPFALILFLTHFIHPFFGLPLLVHPSTLIY 230
S ++N L + + FF + I F L +L+ F LP+LV+P TLI+
Sbjct: 188 SAKLVNTLIIEQIKFFGVNIGIGRAILFNLCSYLSSFGWSGLALPILVYPPTLIW 242
>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 246
Score = 25.4 bits (53), Expect = 3.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 207 VHPSTLIYSLLFCQHVLPLFS*HAYTLSNDSLLTFYHW 320
+H S+L YSLLF + V + L N+ L F HW
Sbjct: 203 LHFSSLGYSLLFNEIVATISKAWPELLPNNLPLQFPHW 240
>SPCC306.06c |||ER membrane protein, BIG1 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 200 STCPSFHINIFITILSTCASSLLI 271
STCP + I LSTC ++ LI
Sbjct: 43 STCPMMFFDAAIEALSTCNTATLI 66
>SPAC167.04 |pam17||presequence translocase-associated motor subunit
Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 5.2
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 63 ISSFPV-LNALGVGAVFFLLPYVISSFTPFALILFLTHFIHPFF--GLPLLVHPS 218
++S P L LG+G+ +FL V + T L LF + I GL L+ PS
Sbjct: 64 LTSIPTALTGLGLGSAYFLTRTVDPTMTIMGLDLFTLYVIGTIASGGLGWLLGPS 118
>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 24.6 bits (51), Expect = 6.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 131 LFIYSFCSHIIPHTLHPSFFWPSSTCPSFHINIFITILSTCASS 262
+F+ + + I L PS + S+ PSF + F+++L ASS
Sbjct: 57 VFLTGWAAKSIIVKLLPSLWRLSTLIPSFFASFFMSLLGKDASS 100
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 24.6 bits (51), Expect = 6.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 112 KNTAPTPSAFRTGNDDILNVPVTG 41
+++A PSAF ++ L+VP++G
Sbjct: 533 RSSASPPSAFTKAGNEALSVPLSG 556
>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/59 (20%), Positives = 26/59 (44%)
Frame = -3
Query: 301 RESFDNV*ACYEKRGSTC*QNSNEYINVEGWTSRGRPKKGWMKCVRNNMRAKGVNEEIT 125
+ + D++ C K+ + ++Y+ +E WTS K + N + + EI+
Sbjct: 4 QRAIDSIEECLNKQLRLSSEKVDQYVLIENWTSLVGHLKTLHSLISNYTNGRELQNEIS 62
>SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 24.6 bits (51), Expect = 6.8
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +3
Query: 60 KISSFPVLNALGVGAVFFLLP--YVISSFTPFALILFLTHFIHPFF 191
K S PVL A GVG + P I T +L ++HF F
Sbjct: 64 KAQSHPVLLAAGVGGIVVRCPSRKPIYRTTRIQYLLLISHFTTALF 109
>SPBC2G5.04c |||COPII-coated vesicle component Erv41
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 333
Score = 24.2 bits (50), Expect = 9.0
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +2
Query: 80 SKRTGGRRSIFSSSICDLFIYSFCSHIIPHTLHPSFFWPSSTCPSFHINIFITILSTCAS 259
S GG +I S + + ++S C I F S +NI ITI C++
Sbjct: 27 SSSRGGFFTILLSVLIVVLVFSQCVQYIRGIREQELFIYDSVSELMDLNIDITIAMPCSN 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,675
Number of Sequences: 5004
Number of extensions: 40782
Number of successful extensions: 133
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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