Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_O14
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524           31   0.31 
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482...    28   3.8  
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     27   5.1  
12_02_1110 + 26154024-26154314,26154400-26154944,26155023-261551...    27   8.8  
09_03_0128 + 12584166-12585320                                         27   8.8  
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472...    27   8.8  
06_01_0930 - 7181514-7181756,7181847-7181903,7182656-7182859,718...    27   8.8  
01_05_0298 + 20591470-20591892,20592696-20592892,20594446-20594707     27   8.8  

>05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524
          Length = 427

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -3

Query: 190 KKGWMKCVRNNMRAKGV----NEEITYGRRKNTAPTPSAFRT-GNDDI 62
           K  W  C++  +R KG+    ++ +T   R+  APT S  RT G+ D+
Sbjct: 105 KNLWNSCIKKKLRQKGIDPNTHKPLTEADRRGAAPTVSTERTSGSSDV 152


>02_02_0455 +
           10445417-10446931,10447370-10447903,10448198-10448278,
           10448699-10448770,10449643-10449669
          Length = 742

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 321 ASGRKLKGNRLTTYRHVMRREEAHVDKIVMNILMWKDGQVEEGQ 190
           ASG++ K + L + +HV+R    +   +++   +W D   E GQ
Sbjct: 278 ASGKEAKTDHLDSIQHVLRENVKNKRILIILDDVWDDALKENGQ 321


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +2

Query: 14  TQGFIP---AIVAGHGYI*DIIIPCSKRTGGRR 103
           ++GF P   A+ +G GY+   ++PC  R GGR+
Sbjct: 238 SKGFTPSEEAVRSGTGYV---VLPCPSRRGGRK 267


>12_02_1110 +
           26154024-26154314,26154400-26154944,26155023-26155109,
           26155237-26155293,26155369-26155607,26155715-26155833,
           26155945-26156031,26156117-26156194
          Length = 500

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 224 NIFITILSTCASSLLITCLYVVKRFPFNFL 313
           ++F+ I ++ A S+L T L +V R+P + L
Sbjct: 345 SVFVVITASVAFSILATILVLVLRYPLSTL 374


>09_03_0128 + 12584166-12585320
          Length = 384

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 273 HAYTLSNDSLLTFYHWRP 326
           + Y L++D+LL   HWRP
Sbjct: 276 YQYVLADDNLLISVHWRP 293


>08_02_0246 +
           14745367-14745372,14745452-14746106,14746299-14747269,
           14748123-14749168,14750669-14751473
          Length = 1160

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 321 RPSQTFKVIIYRVNECLTSNIFS 389
           R S T+  ++  VN C+T+NI+S
Sbjct: 284 RTSLTYGKLLEEVNNCITANIYS 306


>06_01_0930 -
           7181514-7181756,7181847-7181903,7182656-7182859,
           7182937-7183266
          Length = 277

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 77  CSKRTGGRRSIFSSSICDLFIY 142
           CSK+ GG+++  S+S+C L  Y
Sbjct: 247 CSKKLGGQKTTGSNSMCPLASY 268


>01_05_0298 + 20591470-20591892,20592696-20592892,20594446-20594707
          Length = 293

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 184 GWMKCVRNNMRAKGVNEEITYGRRKNTAPTPS 89
           G   C R   RA  VN E+  G  +  AP PS
Sbjct: 49  GCCGCARCGCRAAAVNGEMAVGGEQKKAPGPS 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,790,436
Number of Sequences: 37544
Number of extensions: 237857
Number of successful extensions: 651
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)