Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_O12
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   1.6  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    25   3.8  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   3.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    24   5.0  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    24   6.6  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 78  HKLIINVNSINRCLEMQFTR 19
           +K IINVNS+ R L+M+  R
Sbjct: 313 YKTIINVNSLFRILDMEIER 332


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +2

Query: 221 PSGNAFYSFQW 253
           P+GNAFYSF++
Sbjct: 11  PNGNAFYSFEY 21


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 253 PLETVERIARWTVHHFTLKLAMLHCHYRCLGHSATSQVI*ELINCRYHDD-AFSNW 89
           PL ++   + W V  F L     H H   + HS+T       +NC +    +FS+W
Sbjct: 151 PLVSLPSSSPWGVCLFALGAESGHVHLSIMSHSSTPFFKSFDLNCSWVVQLSFSSW 206



 Score = 23.4 bits (48), Expect = 8.7
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 253 PLETVERIARWTVHHFTLKLAMLHCHYRCLGHSATSQVI*ELINCRYHDDAFS 95
           PL TV    R  V+ F+    +LH  + C+   +T      L  CR H  A+S
Sbjct: 99  PLLTV-LTNRHRVYFFSSSSRVLHQKWTCVAQMSTHLPSDPLELCRIHSVAWS 150


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 237 STVSSGIPYSKTPLRSLRFRAPQTPEP 317
           STV SG P S +   + +   PQ PEP
Sbjct: 889 STVVSGSPSSSSKSDAAKSIKPQKPEP 915


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 256 IPLETVERIARWTVHHFT 203
           +PL+T++R   W  HH +
Sbjct: 433 LPLQTLDRFIDWFSHHLS 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,335,064
Number of Sequences: 5004
Number of extensions: 24527
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)