Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_O06
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    28   0.83 
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    27   1.9  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    26   2.5  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   7.8  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   7.8  

>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 121 LFQKWQRMVAPPESQRPASKRR 186
           LFQ+W R   PPE  +P   +R
Sbjct: 60  LFQRWYRSFLPPEDGKPQKLKR 81


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 390 PLDSVALVLG-VLEPGDQSLVFIAEFAAHQRRFPHYHHVLRGETEVGS 250
           P D+  L LG  ++ G QSL  I    A++ ++P    +LRG  E  S
Sbjct: 78  PPDANYLFLGDYVDRGKQSLEVICLLFAYKIKYPENFFLLRGNHEFAS 125


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 390 PLDSVALVLG-VLEPGDQSLVFIAEFAAHQRRFPHYHHVLRGETEVGS 250
           P ++  L LG  ++ G QSL  I    A++ ++P    +LRG  E  S
Sbjct: 81  PPEANYLFLGDYVDRGKQSLEVICLLLAYKIKYPENFFILRGNHECAS 128


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 316 RRPSAKVPPLPSRP 275
           RRPS+  PP+PS P
Sbjct: 186 RRPSSSPPPIPSIP 199


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 316 EFGDEDERLITRLENTQYEGDGVE 387
           +FG E +RL  +LE  QY  D ++
Sbjct: 12  DFGGELDRLEMKLEEAQYNIDNIQ 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,632,897
Number of Sequences: 5004
Number of extensions: 27914
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)