Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_O06
(475 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0264 - 21785450-21786928 33 0.16
04_03_0681 + 18628107-18629346,18630476-18630486,18630836-186309... 33 0.16
11_06_0257 + 21746643-21748091 26 0.23
11_06_0258 + 21750922-21752272,21752971-21753377 25 0.38
06_03_1358 - 29548440-29549315 29 2.5
09_02_0402 + 8582235-8582360,8582452-8582552,8584328-8584425,858... 28 4.4
03_01_0640 - 4683970-4684481,4685197-4685343,4685606-4686764,468... 28 4.4
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 28 4.4
11_01_0600 - 4780579-4780839,4781256-4781324,4781535-4781598,478... 27 5.8
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 27 5.8
05_02_0006 - 5541290-5541961 27 5.8
01_06_1170 + 35087705-35088211 27 5.8
09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438 27 7.7
04_04_1176 + 31494318-31495685 27 7.7
03_04_0243 + 19298293-19299117 27 7.7
>11_06_0264 - 21785450-21786928
Length = 492
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -1
Query: 217 PRSPPRCLYVCVAYSPVAVIQEARPSAATF 128
PR PP LY C AY P A + +AATF
Sbjct: 77 PRQPPCLLYACDAYGPDAAALYSPSTAATF 106
>04_03_0681 +
18628107-18629346,18630476-18630486,18630836-18630943,
18631158-18631250
Length = 483
Score = 32.7 bits (71), Expect = 0.16
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -2
Query: 390 PLDSVALVLGVLEPGDQSLVFIAEFAAHQRRFPHYH-HVLRGETEVGSWRAFLSGRGGSR 214
PLD V+ GVL GD LV E+ H + +H H+ +T+ S + GRG
Sbjct: 128 PLDVVSRRAGVLSCGDHCLVVDPEWRFHDDDWMKFHLHIFSSKTKRWSNKVAKLGRGMEA 187
Query: 213 VRP 205
P
Sbjct: 188 FNP 190
>11_06_0257 + 21746643-21748091
Length = 482
Score = 26.2 bits (55), Expect(2) = 0.23
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 217 PRSPPRCLYVCVAYSPVAVIQEARPSAATF 128
P+ PP LY C AY P A + AT+
Sbjct: 59 PKQPPCLLYSCDAYGPDAAGLYCPSTGATY 88
Score = 24.6 bits (51), Expect(2) = 0.23
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 352 AW*SIARLHRRIRRPSAKVPP 290
+W + R RR+R PS K PP
Sbjct: 43 SWHAAYRTFRRLRLPSPKQPP 63
>11_06_0258 + 21750922-21752272,21752971-21753377
Length = 585
Score = 25.4 bits (53), Expect(2) = 0.38
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 217 PRSPPRCLYVCVAYSPVA 164
P+ PP LY C AY P A
Sbjct: 59 PKQPPCLLYSCDAYGPDA 76
Score = 24.6 bits (51), Expect(2) = 0.38
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 352 AW*SIARLHRRIRRPSAKVPP 290
+W + R RR+R PS K PP
Sbjct: 43 SWHAAYRTFRRLRLPSPKQPP 63
>06_03_1358 - 29548440-29549315
Length = 291
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 268 ASQDVMVVGEPSLMGGEFGDEDERLITRLENTQ 366
A DV+ +G+ GE+GDE+ R++T L+ Q
Sbjct: 212 ADDDVLGIGD----AGEWGDENRRIVTELKQQQ 240
>09_02_0402 +
8582235-8582360,8582452-8582552,8584328-8584425,
8585089-8585151,8586540-8586721,8586874-8587146
Length = 280
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 120 ALPKVAADGRAS*ITATGE*ATQT*RQRGGERGSPRAH*ETLARTQLQSRLAGRDGS 290
A P + AD +A TA+GE T+T R +G + GSP + R + Q G GS
Sbjct: 164 ACPALEADPQA---TASGEVTTRTWRWQGEDYGSPTRRGDARGRCR-QVDAGGTSGS 216
>03_01_0640 -
4683970-4684481,4685197-4685343,4685606-4686764,
4686851-4686907
Length = 624
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 349 W*SIARLHRRIRRPSAKVP-PLPSRPARRD 263
W + R HR + RP+A VP +PS R D
Sbjct: 226 WRLLLRSHRNLHRPAATVPAAVPSAEQRHD 255
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 148 APPESQRPASKRRKRK 195
APP+S++ ASKRRKR+
Sbjct: 784 APPQSRQGASKRRKRR 799
>11_01_0600 -
4780579-4780839,4781256-4781324,4781535-4781598,
4781791-4781919,4782234-4782541
Length = 276
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -1
Query: 412 VRREGARSTRLRRPRTGCSRAW*SIARLHRRIRRPSAKVPPL 287
+RR R R RR RT W RL + RRP + PPL
Sbjct: 52 LRRRARR--RERRRRTWLPAMWSPDCRLELQHRRPPSTAPPL 91
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +3
Query: 264 SRLAGRDGSGGTFADGXXXXXXXXAIDHQAREHPVRGR 377
SRL GRDGSGG D + R V R
Sbjct: 188 SRLRGRDGSGGDHGDATAAAAASREVAPPPRPRDVYHR 225
>05_02_0006 - 5541290-5541961
Length = 223
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = -1
Query: 325 RRIRRPSAKVPPLPSRPARRD*SWVLASVS*WARGEPRSPPRCLYVCVAYSPVAVIQEAR 146
+R+RR + +P S P +S A+G P CL V A SP + +
Sbjct: 88 KRVRRANVMLPAPSSSPKNHQNVDFFSSPLCSAQGTTAMPTTCLPVYTAGSPGSSASRSS 147
Query: 145 PSAA 134
P+A+
Sbjct: 148 PAAS 151
>01_06_1170 + 35087705-35088211
Length = 168
Score = 27.5 bits (58), Expect = 5.8
Identities = 24/73 (32%), Positives = 28/73 (38%)
Frame = +3
Query: 243 LARTQLQSRLAGRDGSGGTFADGXXXXXXXXAIDHQAREHPVRGRRSRVERAPSRLTG*N 422
L R L L G G GG F + V RRS E +PSRL
Sbjct: 27 LGRLSLSLDLNG--GGGGAFRPSTLLDEYERLAIEAQLDRAVL-RRSYSEPSPSRLAVVA 83
Query: 423 PARQPLTPPGASG 461
P + PPGA+G
Sbjct: 84 PQDKQEAPPGAAG 96
>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
Length = 617
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 243 LARTQLQSRLAGRDGSGGTFADG 311
L R L + +DGSGG FADG
Sbjct: 308 LVRRTLPRLASAKDGSGGGFADG 330
>04_04_1176 + 31494318-31495685
Length = 455
Score = 27.1 bits (57), Expect = 7.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -1
Query: 232 WARGEPRSPPRCLYVCVAYSPVAVI 158
W+R P + PRCL+ ++ +A++
Sbjct: 234 WSRCTPMNLPRCLFASGSFGEIAIV 258
>03_04_0243 + 19298293-19299117
Length = 274
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 133 WQRMVAPPESQRPASKRRKR 192
W R APP S P S RR R
Sbjct: 194 WSRTSAPPASSSPTSPRRAR 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,898,197
Number of Sequences: 37544
Number of extensions: 272503
Number of successful extensions: 1039
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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