Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_O04
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   192   2e-50
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   192   2e-50
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   192   2e-50
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   2.6  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   2.6  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   4.5  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    24   7.8  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  192 bits (467), Expect = 2e-50
 Identities = 87/124 (70%), Positives = 105/124 (84%)
 Frame = +2

Query: 29  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 208
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 209 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEQM 388
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EE+ 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 389 GDRG 400
           GDRG
Sbjct: 120 GDRG 123


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  192 bits (467), Expect = 2e-50
 Identities = 87/124 (70%), Positives = 105/124 (84%)
 Frame = +2

Query: 29  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 208
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 209 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEQM 388
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EE+ 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 389 GDRG 400
           GDRG
Sbjct: 120 GDRG 123


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  192 bits (467), Expect = 2e-50
 Identities = 87/124 (70%), Positives = 105/124 (84%)
 Frame = +2

Query: 29  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 208
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 209 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEQM 388
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EE+ 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 389 GDRG 400
           GDRG
Sbjct: 120 GDRG 123


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 295 LWQESNSRSWQCNACGCYA 351
           LW++       CNACG YA
Sbjct: 429 LWRKDRHGQTVCNACGLYA 447



 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 295 LWQESNSR-SWQCNACGCYA*RY 360
           LW+ ++ + ++ CNACG Y  +Y
Sbjct: 375 LWRRTSDKLNFLCNACGLYNKQY 397


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 295 LWQESNSRSWQCNACGCY 348
           LW+     S  CNACG Y
Sbjct: 22  LWRRGPDNSLLCNACGLY 39



 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 295 LWQESNSRSWQCNACGCY 348
           LW+   S +  CNACG Y
Sbjct: 182 LWRRDESGNPICNACGLY 199


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 50  QRKGAGSVFVSHTKKRKGAPKLRSLD 127
           +R+G+     +HTK+ K APK    D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 71  VFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 205
           V+   + ++KGA     LD A +H   + + +   HDP +G  LA
Sbjct: 254 VYTVASPQKKGAVFRLDLDQATQHTLGRELKRFASHDPHQGWHLA 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,179
Number of Sequences: 5004
Number of extensions: 36736
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)