Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_O04
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      199   8e-52
08_01_0397 - 3509186-3510291,3510322-3512335                           27   7.5  
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    27   7.5  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  199 bits (485), Expect = 8e-52
 Identities = 86/124 (69%), Positives = 106/124 (85%)
 Frame = +2

Query: 29  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 208
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 209 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEQM 388
           V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120

Query: 389 GDRG 400
           GDRG
Sbjct: 121 GDRG 124


>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 29  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 139
           +GR  RA RKG    F+S  ++R     +++L+ +E+
Sbjct: 749 VGRTGRAGRKGFAVTFISEEEERYAPDLVKALELSEQ 785


>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
            35420909-35420931,35421647-35421843,35421964-35422159,
            35422382-35422481,35423288-35423374,35424053-35424282,
            35424678-35424763,35425148-35425271,35425415-35428573,
            35430014-35430019
          Length = 1566

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 271  SLYWSICLLWQESNSRSWQCNACGC 345
            S Y   CL  QE    SW C+ C C
Sbjct: 1045 STYHQTCLSDQELPEGSWYCHNCTC 1069


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,980,085
Number of Sequences: 37544
Number of extensions: 255407
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)