Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_O04
(405 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 200 3e-52
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical p... 28 2.2
Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical p... 28 2.9
Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical pr... 28 2.9
X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein. 28 2.9
Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical pr... 27 6.8
U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and en... 27 6.8
AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type tra... 27 6.8
AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type tra... 27 6.8
AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a... 27 6.8
AF067213-2|AAC16999.1| 225|Caenorhabditis elegans Hypothetical ... 27 6.8
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 27 6.8
AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal... 27 6.8
AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock tr... 26 9.0
AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock tr... 26 9.0
AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical ... 26 9.0
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 200 bits (488), Expect = 3e-52
Identities = 85/124 (68%), Positives = 104/124 (83%)
Frame = +2
Query: 29 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 208
MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60
Query: 209 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEQM 388
+ FRDPYK+KT K +A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E +
Sbjct: 61 IAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKS 120
Query: 389 GDRG 400
GDRG
Sbjct: 121 GDRG 124
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 29 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 139
+GR R+ +KG F +HT K L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500
>Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 140 HGYIKGVVKDIIHDPGRGAPLAVVHFR 220
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 140 HGYIKGVVKDIIHDPGRGAPLAVVHFR 220
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical
protein Y57G11C.44 protein.
Length = 155
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 77 VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 202
+S ++RK + LD+++ G K ++KDI +D + P+
Sbjct: 1 MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42
>Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical
protein W09C2.1b protein.
Length = 416
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 295 LWQESNSRSWQCNACGCY 348
LW+ S ++ CNACG Y
Sbjct: 227 LWRRDGSGNYLCNACGLY 244
>Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical
protein W09C2.1a protein.
Length = 488
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 295 LWQESNSRSWQCNACGCY 348
LW+ S ++ CNACG Y
Sbjct: 299 LWRRDGSGNYLCNACGLY 316
>X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein.
Length = 416
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 295 LWQESNSRSWQCNACGCY 348
LW+ S ++ CNACG Y
Sbjct: 227 LWRRDGSGNYLCNACGLY 244
>Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical
protein T24D3.1 protein.
Length = 174
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 238 DAQRTVHCSRRSLYWSICLLWQESNSRSW-QCNACGCYA*RYN 363
D +++ CS S+ +I W+ S+ QCNAC Y +YN
Sbjct: 107 DNKKSFQCSNCSVTETI--RWRNIRSKEGIQCNACFIYQRKYN 147
>U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and
endoderm determinationprotein 2 protein.
Length = 174
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 238 DAQRTVHCSRRSLYWSICLLWQESNSRSW-QCNACGCYA*RYN 363
D +++ CS S+ +I W+ S+ QCNAC Y +YN
Sbjct: 107 DNKKSFQCSNCSVTETI--RWRNIRSKEGIQCNACFIYQRKYN 147
>AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 238 DAQRTVHCSRRSLYWSICLLWQESNSRSW-QCNACGCYA*RYN 363
D +++ CS S+ +I W+ S+ QCNAC Y +YN
Sbjct: 107 DNKKSFQCSNCSVTETI--RWRNIRSKEGIQCNACFIYQRKYN 147
>AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 238 DAQRTVHCSRRSLYWSICLLWQESNSRSW-QCNACGCYA*RYN 363
D +++ CS S+ +I W+ S+ QCNAC Y +YN
Sbjct: 107 DNKKSFQCSNCSVTETI--RWRNIRSKEGIQCNACFIYQRKYN 147
>AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a
protein.
Length = 658
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 208 CPFP*SVQVQDAQRTVHCSRRSLYWSICLLWQESNSRSWQCNA 336
C P SV + + C + Y + +W +SN ++ QC A
Sbjct: 610 CARPTSVAEYRSCQREWCKKADAYKAALNIWSDSNKKNVQCKA 652
>AF067213-2|AAC16999.1| 225|Caenorhabditis elegans Hypothetical
protein T25B2.1 protein.
Length = 225
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 7 GLIDGLNYGSCNTCS 51
GLI G +YG NTCS
Sbjct: 28 GLIPGYSYGDANTCS 42
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 205 CCPFP*SVQVQDAQRTVHCSRRSLYWSICLL 297
CCP Q +D T+H RR+LY+S L+
Sbjct: 208 CCP----EQYEDITFTLHLRRRTLYYSFNLI 234
>AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal
protein 20, isoform a protein.
Length = 658
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 208 CPFP*SVQVQDAQRTVHCSRRSLYWSICLLWQESNSRSWQCNA 336
C P SV + + C + Y + +W +SN ++ QC A
Sbjct: 610 CARPTSVAEYRSCQREWCKKADAYKAALNIWSDSNKKNVQCKA 652
>AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 258 MNSSLRVLNLYGSRKWT 208
MNS +R LN+YG RK T
Sbjct: 140 MNSMVRQLNMYGFRKMT 156
>AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 258 MNSSLRVLNLYGSRKWT 208
MNS +R LN+YG RK T
Sbjct: 140 MNSMVRQLNMYGFRKMT 156
>AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical
protein Y53C10A.12 protein.
Length = 671
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 258 MNSSLRVLNLYGSRKWT 208
MNS +R LN+YG RK T
Sbjct: 140 MNSMVRQLNMYGFRKMT 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,131,371
Number of Sequences: 27780
Number of extensions: 223787
Number of successful extensions: 525
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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