Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_O04
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   4.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.0  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   5.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.3  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 259 CSRRSLYWSICLL 297
           CS    YW +C+L
Sbjct: 84  CSSFRFYWDLCML 96


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 259 CSRRSLYWSICLL 297
           CS    YW +C+L
Sbjct: 84  CSSFRFYWDLCML 96


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 259 CSRRSLYWSICLL 297
           CS    YW +C+L
Sbjct: 84  CSSFRFYWDLCML 96


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 139 TFGIV*GTKFRCTFPFFGM 83
           T GI+ G    C  PFF M
Sbjct: 10  TLGIIVGGFILCWLPFFTM 28


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -3

Query: 193 PSTRVMNYILYDSLDVSMTFGIV*GTKFRCTFPFF 89
           P  + + + L      S T GI+      C  PFF
Sbjct: 355 PHQKKLRFHLAKERKASTTLGIIMSAFIVCWLPFF 389


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 139 TFGIV*GTKFRCTFPFFGM 83
           T GI+ G    C  PFF M
Sbjct: 458 TLGIIVGGFILCWLPFFTM 476


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 360 VPSGIAPTGITLPTSRVAFLP 298
           VP G   TGI  P   V F P
Sbjct: 262 VPVGRVETGILKPGMLVTFAP 282


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 139 TFGIV*GTKFRCTFPFF 89
           T GIV G    C  PFF
Sbjct: 336 TLGIVMGVFIICWLPFF 352


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 138 RSA*SKERSLGAPFLFLVCETNTEPAP 58
           R A ++E     P +FL C  +  P P
Sbjct: 397 RQAFAEETLQPGPSMFLKCVASGNPTP 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,578
Number of Sequences: 438
Number of extensions: 2867
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)