Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_O03
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   4.0  
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha...    24   5.3  
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    23   7.1  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    23   7.1  
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    23   7.1  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    23   7.1  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    23   9.3  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 208 YIHEYMDITRVF 173
           Y+H+Y+D+ RVF
Sbjct: 750 YVHQYIDLLRVF 761


>SPAC29B12.04 |snz1||pyridoxine biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 248 IKDYLKLISCYLILYSRIYGHNSSVHMLFSITCDYIDDS 132
           IK+    +S  ++   RI GH     +L SI  DYID+S
Sbjct: 69  IKEIQAAVSIPVMAKVRI-GHFVEAQILESIGVDYIDES 106


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 230 LISCYLILYSRIYGHNSSVH 171
           L+  YL +Y   +GH+ SVH
Sbjct: 82  LLKYYLSMYRIQFGHDPSVH 101


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 156  YRKKHMNTRVMSIYS*I*Y*VTRNQFQIIFNPIFKTN*IT 275
            Y KKHM  R++ I   +   +T   FQ+++     T  +T
Sbjct: 937  YGKKHMQARIIGIMLLLLMAMTVVPFQLVYGVALCTQTVT 976


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 128 MYCRQCNHRL*KKAYEHSSY 187
           ++C+ CNH    K   H+ Y
Sbjct: 89  VHCKYCNHPFNPKCKNHAGY 108


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 275 CYLVCFENWIKDYLKLISCYLILYSRIYGHNSSVHMLFSI 156
           C L C E+ +++  +L S YL +    +   S++H  F +
Sbjct: 221 CLLTCIESTMRELRRLNSAYLDMED--WNIESALHRSFDV 258


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 195 IWT*LECSYAFFY 157
           IW  LEC Y ++Y
Sbjct: 203 IWLALECGYRYYY 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,052,159
Number of Sequences: 5004
Number of extensions: 18398
Number of successful extensions: 39
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)