Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_O02
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 158 4e-40
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 154 6e-39
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 28 0.92
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 2.8
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 4.9
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 4.9
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 25 8.5
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 25 8.5
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 8.5
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 158 bits (384), Expect = 4e-40
Identities = 81/157 (51%), Positives = 108/157 (68%), Gaps = 2/157 (1%)
Frame = +3
Query: 9 GIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPI 188
GIDI H RK +R++ S++V T+++FN+ IL+RLF S+ NRPPI
Sbjct: 2 GIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPI 61
Query: 189 SLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 362
S+S++A K + EG V+VGTV++D RL TVPK++VAAL T+ ARARIL AGGE
Sbjct: 62 SISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGE 121
Query: 363 ILTFDQLALRAPTGRKTVLVQARRNAREAVRHFGPAP 473
+LT DQLALRAPTG TVL++ +++AREA RHFG P
Sbjct: 122 VLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFGP 158
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 154 bits (374), Expect = 6e-39
Identities = 78/157 (49%), Positives = 107/157 (68%), Gaps = 2/157 (1%)
Frame = +3
Query: 9 GIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPI 188
GIDI H +K +R++ S++V T+++FN+ IL+RLF S+ NRPPI
Sbjct: 2 GIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPI 61
Query: 189 SLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 362
S+S++A K + + VVVGTV++D R+ TVPK+++AAL T+ ARARIL AGGE
Sbjct: 62 SISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGE 121
Query: 363 ILTFDQLALRAPTGRKTVLVQARRNAREAVRHFGPAP 473
+LT DQLALRAPTG TVLV+ +++AREA RHFG P
Sbjct: 122 VLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFGP 158
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.9 bits (59), Expect = 0.92
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 176 PTSDFFVPFGTPHEEAYTRGFDRCSR 253
P +D F+PF TP +AY + R R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR 234
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 402 GRKTVLVQARRNAREAVRHFGPAPGA-PR 485
G L Q RR V HFG APG+ PR
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGSTPR 872
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 375 DQLALRAPTGRKTVLVQARRNAREAVRHFGPA 470
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 4.9
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +3
Query: 180 PPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 359
PP+ S L + T + L ++ + + R+ T+PK+ + L + +R +L +GG
Sbjct: 206 PPVDESFLMGSISSDTVDTLHTYLIKALQD--RVLTIPKLCSSNLDCSHYSRVCVLYSGG 263
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 111 PSICTVLPIVSSTHPET*LRCAELSCRVYD 22
P +CTVLPI+ + + + C++YD
Sbjct: 150 PHLCTVLPIMIPVYKWWQVPYFFVGCKIYD 179
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 124 FVRLAKYLYSFTN 86
F LAKYLYSFT+
Sbjct: 114 FPELAKYLYSFTD 126
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 360 EILTFDQLALRAPTGRKTVLVQARRNAREAV 452
E+L D +L P+G+ T LV A + + +
Sbjct: 434 EVLVLDNFSLVCPSGKITALVGASGSGKSTI 464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,015
Number of Sequences: 5004
Number of extensions: 37447
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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