Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_O02
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 171 3e-43
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 170 5e-43
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 156 1e-38
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 30 0.92
09_06_0358 - 22504716-22505588 27 6.5
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665... 27 8.6
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 8.6
02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747... 27 8.6
01_01_0512 + 3735005-3735580 27 8.6
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 171 bits (416), Expect = 3e-43
Identities = 91/170 (53%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Frame = +3
Query: 9 GID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 185
GID + ++K +RT +S+DV T + FN +IL+RLFMS+ NRPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPP 61
Query: 186 ISLSRLARHM--KKPTREGL----IAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARIL 347
+S+ RL R M K P R + IAV+VGTV++D R+Y VP M VAAL TE ARARI+
Sbjct: 62 LSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARII 121
Query: 348 AAGGEILTFDQLALRAPTGRKTVLVQARRNAREAVRHFGPAPGAPRSHTK 497
AGGE LTFDQLALRAP G+ TVL++ +NAREAV+HFGPAPG P S+TK
Sbjct: 122 NAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTK 171
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 170 bits (414), Expect = 5e-43
Identities = 89/164 (54%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Frame = +3
Query: 9 GID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 185
GID + ++K +RT +S DV T + FN +IL+RLFMS+ NRPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPP 61
Query: 186 ISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEI 365
+SL RLA+ M+ E IAV+VGTV++D R+ +PKM V AL TE ARARI+ AGGE
Sbjct: 62 LSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGEC 120
Query: 366 LTFDQLALRAPTGRKTVLVQARRNAREAVRHFGPAPGAPRSHTK 497
LTFDQLALRAP G TVL++ +NAREAVRHFG APG P SHTK
Sbjct: 121 LTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTK 164
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 156 bits (378), Expect = 1e-38
Identities = 91/181 (50%), Positives = 112/181 (61%), Gaps = 18/181 (9%)
Frame = +3
Query: 9 GID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 185
GID + ++K +RT KS DV T + FN +ILRRLFMS+ NRPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPP 61
Query: 186 ISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEI 365
+SL RL R M+ +E IAV+VGTV++D R+Y VP M VAAL TE ARARI+ GGE
Sbjct: 62 LSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGEC 119
Query: 366 LTFDQLALRAPTGRKT-----------------VLVQARRNAREAVRHFGPAPGAPRSHT 494
LTFDQLALRAP G+ T VL++ +NAREAV+HFGPAPG P S+T
Sbjct: 120 LTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNT 179
Query: 495 K 497
K
Sbjct: 180 K 180
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 30.3 bits (65), Expect = 0.92
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 311 CGYCHFRNS--VKPHIIGDCANDYSDQTLACRLLHVACQTGQRNRRSVDTAHKQSP 150
C Y H R S V H +C N++ C HV C+ + RRS + AHKQ+P
Sbjct: 658 CSYRHCRESKMVSDHY-KNCINEH------C---HVCCKAKEMLRRSSELAHKQNP 703
>09_06_0358 - 22504716-22505588
Length = 290
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 381 LALRAPTGRKTVLVQARRNAREAVRHFGPAPGAP 482
L L+ P+GR ++ R RE R++ P+P P
Sbjct: 116 LRLKRPSGRPHGRLEVRVAVREPKRYYDPSPAYP 149
>06_03_0437 -
20765682-20765951,20766040-20766294,20766374-20766545,
20766964-20767097,20767205-20767288,20767369-20767659,
20767867-20768214,20768321-20768496,20768579-20768695,
20768780-20768936,20769110-20769225,20769323-20769483,
20769567-20769883,20769969-20770250,20770347-20770648,
20771977-20772067,20773203-20773256,20773723-20773812
Length = 1138
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 372 FDQLALRAPTGRKTVLVQARRNAREAVRHFGPAPGAPRSHTK 497
FD+L L G+ Q RN+++ + +F PG P+ K
Sbjct: 832 FDELLLLKRGGQVIYSGQLGRNSQKMIEYFEAIPGVPKIKDK 873
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 249 VVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLAL 389
++G++ DV ++ + VAA+ V + R + GG +L Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373
>02_03_0273 +
17173983-17174339,17174423-17174575,17174638-17174700,
17174943-17175026,17175120-17175242,17175466-17175519,
17175669-17175764,17176163-17176258,17177179-17177324,
17178503-17178632,17178697-17179272,17179364-17179462,
17179535-17179687,17179794-17180558,17181384-17181683
Length = 1064
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 467 RPEVTNCLTSITASLNQYCLTSSGRT 390
RP V NCL +S+ Y T SG+T
Sbjct: 200 RPLVENCLDGFNSSIFAYGQTGSGKT 225
>01_01_0512 + 3735005-3735580
Length = 191
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 158 VYEPYQPTSDFFVPFGTPHEEAYTRGFDRCSR 253
VYEP T F +G P A GF+RC R
Sbjct: 153 VYEPTSDTPSTFY-YGDPLPNAVWYGFNRCPR 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,087,156
Number of Sequences: 37544
Number of extensions: 277943
Number of successful extensions: 759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -