Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N24
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo... 130 1e-31
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 115 4e-27
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 1.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.5
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 27 2.0
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 27 2.0
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 2.6
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 26 3.4
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 26 4.5
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 4.5
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.0
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 7.9
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 25 7.9
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 7.9
>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 385
Score = 130 bits (314), Expect = 1e-31
Identities = 64/121 (52%), Positives = 85/121 (70%), Gaps = 5/121 (4%)
Frame = +2
Query: 230 NKIMAEKQLKNRVCIVGSGNWGSAIAKIVGRNA-ARLPNFEDRVTMWVYEEIIEGK---- 394
+ I +K+L + +VGSGNWG+AIAKI G NA A +F +V MWV+EE IE K
Sbjct: 15 DSIRPKKRLS--IGVVGSGNWGTAIAKICGENARAHGHHFRSKVRMWVFEEEIEYKGEKR 72
Query: 395 KLTEIINETHENIKYLPGHKLPTNIVAVPDVVEAAKDADLLILVVPHQFVRTICSTLLGK 574
KLTE+ NE HEN+KYLPG + P N++AVPDV E A+ AD+L+ VVPHQF+ +C ++G
Sbjct: 73 KLTEVFNEAHENVKYLPGIECPPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMVGL 132
Query: 575 I 577
I
Sbjct: 133 I 133
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 115 bits (277), Expect = 4e-27
Identities = 58/107 (54%), Positives = 75/107 (70%), Gaps = 5/107 (4%)
Frame = +2
Query: 266 VCIVGSGNWGSAIAKIVGRNAARLPN-FEDRVTMWVYEEII--EGKK--LTEIINETHEN 430
V I+GSGNWG+AIAKI G NA P+ F +V MW+YEE I EGK+ LTE+ N THEN
Sbjct: 27 VGIIGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQHEGKECNLTEVFNTTHEN 86
Query: 431 IKYLPGHKLPTNIVAVPDVVEAAKDADLLILVVPHQFVRTICSTLLG 571
+KYL G K P+N+ A PD+ + +D+L+ V+PHQFV IC+ L G
Sbjct: 87 VKYLKGIKCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKG 133
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 97 NLIKTIFSVEVLCVLQGQNSFISSCAAVSLAF*CFIFTKSRT 222
N KT+ S + +L Q F + A ++++ CF+ T S+T
Sbjct: 239 NFTKTLLSNVLSTILSVQVIFATVIALIAISVFCFLHTSSKT 280
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 368 VYEEIIEGKKLTEIINETHENIKYLPGHKLPT 463
+ ++ + +K E++NETHE K+L ++ T
Sbjct: 969 IQQKYLASEKTLEMMNETHEQFKHLVESEIST 1000
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 110 QSSL*KCCVSYKDRTVLFHLVPPCHLHFSVLFL 208
+ +L CC KD ++LF PC L V FL
Sbjct: 118 ERALLSCCKRSKDPSILFPTDVPCSLDDDVSFL 150
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 458 PTNIVAVPDVVEAAKDADLLILVVPHQFVRTICSTLLGKI 577
PT++V+VP++ E + ++ LVV V + ST+LG+I
Sbjct: 159 PTDLVSVPEIFEQSNPKPVVHLVVTGH-VDSGKSTMLGRI 197
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 329 ARLPNFEDRVTMWVYEEIIEGKKLTEIINET 421
+ +P ED+ T W+Y+ E KL + + ET
Sbjct: 276 SEIPTEEDQFTDWLYQRWYEKDKLIDTLLET 306
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 414 LIISVNFFPSIISSYTHIVTLSSKFGRRAAFRPTIFAIAEPQF 286
++I+VN F + + YTH + + R P ++AIAE +
Sbjct: 109 VLIAVNPFQRLPNLYTHEIVRAYSEKSRDELDPHLYAIAEDSY 151
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 405 SVNFFPSIISSYTHIVTLSSKFGR 334
+++ PSIISSYT + L++K R
Sbjct: 206 TISALPSIISSYTSLAPLNTKLYR 229
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 415 INNFCQFLSFNNLLIYPHSDSVF 347
IN+F + +FN+ L+YP S VF
Sbjct: 177 INDFSKLWAFNHPLMYPKSAIVF 199
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 281 SGNWGSAIAKIVGRNAARLPNFEDRVTMWVYEEIIEGKKLTEIINETHENIKY 439
S + ++I KI AA+LP+ E+ T W+ + I + IN + E ++
Sbjct: 378 SSSTQTSIPKIQKLKAAKLPSEEENTTKWLNKAINDLVSSLSKINFSTEGTEF 430
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 550 SSNELMRNH*NQKISIFGSLHYIRNSNYVCW 458
SS++L + + +++ I G HY+RN C+
Sbjct: 124 SSSDLEKTYYDKEQEILGCSHYMRNCKVQCF 154
>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 75
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 441 RYFIFSWVSLIISVNFFPSIISSYTHIVTLSSK 343
RY FS + L+ N FP ISS+ ++T K
Sbjct: 26 RYATFSILKLV-EYNCFPGFISSFHSLLTYRKK 57
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 521 ESEDQHLWQPPLHQEQQLCLLEVYAQEGILYF 426
E D+ + P E QLCL ++Y + L F
Sbjct: 106 EHHDRPIGSYPAGMELQLCLSDIYLMQSALGF 137
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 454 FMPRKVFYIFMGFINNFCQFL 392
F+ VF F+GF N+FC FL
Sbjct: 508 FILLAVFRPFVGFKNSFCVFL 528
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,370
Number of Sequences: 5004
Number of extensions: 51733
Number of successful extensions: 171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -