Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N24
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562...   137   7e-33
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726...    49   3e-06
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76...    31   0.50 
02_02_0041 + 6275636-6275749,6276659-6276695,6276927-6277036,627...    30   1.1  
12_02_0799 + 23282793-23282896,23283090-23283172,23283303-232834...    29   3.5  
02_05_1253 + 35270040-35270044,35270213-35270297,35270809-352725...    29   3.5  

>01_07_0341 -
           42855667-42855849,42855933-42855981,42856165-42856219,
           42856290-42856410,42856495-42856532,42856612-42856675,
           42856778-42856885,42857066-42857187,42857544-42857616,
           42857700-42857776,42858521-42858632
          Length = 333

 Score =  137 bits (331), Expect = 7e-33
 Identities = 60/114 (52%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
 Frame = +2

Query: 239 MAEKQLKNRVCIVGSGNWGSAIAKIVGRNAARLPNFEDRVTMWVYEEIIE-GKKLTEIIN 415
           M     KN V ++GSGNWGS  ++++  N A+LP+F D V MWV+EEI+  GKKL+E IN
Sbjct: 1   MENGHAKNLVAVIGSGNWGSVASRLIASNTAKLPSFHDEVRMWVFEEILPTGKKLSESIN 60

Query: 416 ETHENIKYLPGHKLPTNIVAVPDVVEAAKDADLLILVVPHQFVRTICSTLLGKI 577
           + +EN KYLPG KL  N++A PD+  A KDA++L+ V PHQFV  IC  L+GK+
Sbjct: 61  QANENCKYLPGIKLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVGKL 114


>07_01_0874 -
           7261191-7261274,7262291-7262440,7262769-7262916,
           7263136-7263259,7263452-7263653,7263743-7263848,
           7263979-7264442
          Length = 425

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 31/93 (33%), Positives = 47/93 (50%)
 Frame = +2

Query: 263 RVCIVGSGNWGSAIAKIVGRNAARLPNFEDRVTMWVYEEIIEGKKLTEIINETHENIKYL 442
           +V ++G G++G+A+A  V    A L      V+M + ++++        IN +H N KYL
Sbjct: 109 KVVVLGGGSFGTAMAAQVAAKKADL-----EVSMLLRDDLV-----CRSINHSHINCKYL 158

Query: 443 PGHKLPTNIVAVPDVVEAAKDADLLILVVPHQF 541
             H+LP NI A     +A   AD     VP QF
Sbjct: 159 RDHRLPENITATTSASDALAGADFCFHAVPVQF 191


>03_01_0096 +
           763850-764027,764873-765189,765262-765433,765513-765586,
           765658-765835,765917-766026,766122-766221,766305-766391,
           766505-766681,766847-767120,767201-767362,767450-767665,
           767744-767781,768044-768102,768214-768339,768415-768540,
           768642-768695,768789-768851,768924-768986,769079-769141,
           769232-769732
          Length = 1045

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +2

Query: 224 IRNKIMAEKQLKNRVCIVGS--GNWGSAIAKIVGRNAARLPNFEDRVTMWVYEEIIEGKK 397
           + NKI A KQ +  + +      N    ++K++G     +   ED + +  YEE+ + KK
Sbjct: 338 LENKIKAMKQEQTLLSLEAHDCANAVPDLSKMIGAVQTLVAQCED-LKLKYYEEMAKRKK 396

Query: 398 LTEIINETHENIK 436
           L  I+ ET  NI+
Sbjct: 397 LHNIVEETKGNIR 409


>02_02_0041 +
           6275636-6275749,6276659-6276695,6276927-6277036,
           6277113-6277212,6277298-6277384,6277771-6278018,
           6278178-6278231
          Length = 249

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 224 IRNKIMAEKQLKNRVCIVGSGNWGSA--IAKIVGRNAARLPNFEDRVTMWVYEEIIEGKK 397
           + NKI   KQ +  + +   G+  +   ++K+VG   A +   ED + +  YEE+ + KK
Sbjct: 82  LENKIKVMKQEQTLLSLEAHGHANAVPELSKMVGAVQALVVQCED-LKLKYYEEMPKRKK 140

Query: 398 LTEIINET 421
           L  I+ ET
Sbjct: 141 LHNIVEET 148


>12_02_0799 +
           23282793-23282896,23283090-23283172,23283303-23283495,
           23283618-23283756,23283844-23283894,23284274-23284439,
           23284591-23284757,23284857-23285030,23285120-23285215,
           23285288-23285425,23285525-23285844,23285924-23286188,
           23286332-23286575,23288025-23288106,23288189-23288366
          Length = 799

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 261 IEFVLLVPEIGV-QQLQRLLDEMLLVFQTLKTESLCGYMRRLL 386
           I F   +P I   +QL+R  D +L   QTL + +LCG +   L
Sbjct: 43  IFFASAIPVISFGEQLERNTDGVLTAVQTLASTALCGIIHSFL 85


>02_05_1253 +
           35270040-35270044,35270213-35270297,35270809-35272590,
           35272710-35273237
          Length = 799

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 164 HLVPPCHLHFSVLFLLNRVPIRNKIMAEKQLKNRVCIVGSGNWGSAIAKIVGRNAA 331
           H  P C +    + L++     N ++A K L+   C+V S   GS     VG +AA
Sbjct: 668 HSSPSCQIAGLKVLLIDDDDDINLVVARKLLEKLGCVVSSPPSGSGFLSSVGSSAA 723


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,426,391
Number of Sequences: 37544
Number of extensions: 282632
Number of successful extensions: 862
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)