Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N24
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22180-10|CAO82052.1|  360|Caenorhabditis elegans Hypothetical p...   139   1e-33
Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical pr...   139   1e-33
Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical pr...   139   1e-33
Z99171-3|CAB16310.1|  374|Caenorhabditis elegans Hypothetical pr...   100   6e-22
Z22180-9|CAO82051.1|  304|Caenorhabditis elegans Hypothetical pr...    96   1e-20
U39852-8|AAK39261.2|  113|Caenorhabditis elegans Hypothetical pr...    31   0.59 
Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z48045-8|CAI46557.1|  331|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AL021566-3|CAA16499.1|  353|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z95619-2|CAB09114.1|  450|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    27   9.5  

>Z22180-10|CAO82052.1|  360|Caenorhabditis elegans Hypothetical
           protein K11H3.1d protein.
          Length = 360

 Score =  139 bits (337), Expect = 1e-33
 Identities = 62/106 (58%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
 Frame = +2

Query: 263 RVCIVGSGNWGSAIAKIVGRNAARLPN-FEDRVTMWVYEEIIEGKKLTEIINETHENIKY 439
           +V I+GSGNWGSAIA+IVG      P+ F+  V MWV+EEI+ G+KL+E+IN  HENIKY
Sbjct: 5   KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNGEKLSEVINNRHENIKY 64

Query: 440 LPGHKLPTNIVAVPDVVEAAKDADLLILVVPHQFVRTICSTLLGKI 577
           LPG  LP N+VAV D+VE+ + +++L+ VVPHQFV+ IC  L+GKI
Sbjct: 65  LPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICEKLVGKI 110


>Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical
           protein K11H3.1b protein.
          Length = 392

 Score =  139 bits (337), Expect = 1e-33
 Identities = 62/106 (58%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
 Frame = +2

Query: 263 RVCIVGSGNWGSAIAKIVGRNAARLPN-FEDRVTMWVYEEIIEGKKLTEIINETHENIKY 439
           +V I+GSGNWGSAIA+IVG      P+ F+  V MWV+EEI+ G+KL+E+IN  HENIKY
Sbjct: 37  KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNGEKLSEVINNRHENIKY 96

Query: 440 LPGHKLPTNIVAVPDVVEAAKDADLLILVVPHQFVRTICSTLLGKI 577
           LPG  LP N+VAV D+VE+ + +++L+ VVPHQFV+ IC  L+GKI
Sbjct: 97  LPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICEKLVGKI 142


>Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical
           protein K11H3.1a protein.
          Length = 371

 Score =  139 bits (337), Expect = 1e-33
 Identities = 62/106 (58%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
 Frame = +2

Query: 263 RVCIVGSGNWGSAIAKIVGRNAARLPN-FEDRVTMWVYEEIIEGKKLTEIINETHENIKY 439
           +V I+GSGNWGSAIA+IVG      P+ F+  V MWV+EEI+ G+KL+E+IN  HENIKY
Sbjct: 25  KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNGEKLSEVINNRHENIKY 84

Query: 440 LPGHKLPTNIVAVPDVVEAAKDADLLILVVPHQFVRTICSTLLGKI 577
           LPG  LP N+VAV D+VE+ + +++L+ VVPHQFV+ IC  L+GKI
Sbjct: 85  LPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICEKLVGKI 130


>Z99171-3|CAB16310.1|  374|Caenorhabditis elegans Hypothetical
           protein F47G4.3 protein.
          Length = 374

 Score =  100 bits (240), Expect = 6e-22
 Identities = 50/111 (45%), Positives = 70/111 (63%), Gaps = 4/111 (3%)
 Frame = +2

Query: 257 KNRVCIVGSGNWGSAIAKIVGRNA-ARLPNFEDRVTMWVYEEIIEGK---KLTEIINETH 424
           + ++ IVG GNWGSAIA +VG+   A+   F+  V++W  +    G     + E IN TH
Sbjct: 21  RKKIAIVGGGNWGSAIACVVGKTVKAQDEVFQPIVSIWCRDSRKPGDLSPSIAETINSTH 80

Query: 425 ENIKYLPGHKLPTNIVAVPDVVEAAKDADLLILVVPHQFVRTICSTLLGKI 577
           EN KYLPG ++P N+VA   ++EA + A +LILVVPHQ +  IC  L GK+
Sbjct: 81  ENPKYLPGRRIPDNVVATSSLLEACQSAHILILVVPHQGIPQICDELRGKL 131


>Z22180-9|CAO82051.1|  304|Caenorhabditis elegans Hypothetical
           protein K11H3.1c protein.
          Length = 304

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +2

Query: 263 RVCIVGSGNWGSAIAKIVGRNAARLPN-FEDRVTMWVYEEIIEGKKLTEIINETHENIKY 439
           +V I+GSGNWGSAIA+IVG      P+ F+  V MWV+EEI+ G+KL+E+IN  HENIKY
Sbjct: 5   KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNGEKLSEVINNRHENIKY 64

Query: 440 LPGHKLPTNI 469
           LPG  LP N+
Sbjct: 65  LPGKVLPNNV 74


>U39852-8|AAK39261.2|  113|Caenorhabditis elegans Hypothetical
           protein K10C2.6 protein.
          Length = 113

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 475 SNYVCWKFMPRKVFYIFMGFINNFCQFLSFNN 380
           SNY+C  F P   ++ F  +  NF  FL+F N
Sbjct: 7   SNYLCISFSPEFPYFFFETYHKNFEIFLNFTN 38


>Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical
           protein T27C5.1 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
 Frame = -3

Query: 323 FVQQSLQLLNPNFR--NQQYKLDFSIAFL-PLFYFL*VRDLVKIKH*NASDTAAQDEIKL 153
           F  ++  LLN  FR  N + ++ ++   L PL   L     V++      DTA  D +K 
Sbjct: 130 FESRASSLLNNRFRITNNRSRIVYNCVILFPLILVLPFLFFVRLDQ----DTAKLDALKN 185

Query: 152 FCPCKTHNTSTEKIVFIKLINSIAMYL*IIP 60
           +CP +   T++   VFI L +   M   +IP
Sbjct: 186 YCPTREFFTTS---VFIVLTDKTLMSYILIP 213


>Z48045-8|CAI46557.1|  331|Caenorhabditis elegans Hypothetical
           protein C41C4.10 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 309 FAIAEPQFPEPTIQTRFFNCFSAIILFLIGTRFSKNKTLK 190
           F + EP+FP+ T   R+ +C   I      T F+ NK L+
Sbjct: 16  FKLGEPRFPQDTFLGRYLHCLDVID---PRTLFASNKKLE 52


>AL021566-3|CAA16499.1|  353|Caenorhabditis elegans Hypothetical
           protein F08E10.3 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -3

Query: 182 DTAAQDEIKLFCPCKTHNTSTEKIVFIKLINSIAMYL*IIPCA 54
           D A  + +K++ PC T    T   VFI LI+ +A+   IIP A
Sbjct: 176 DVAKLEALKIY-PCPTQEFFTTS-VFIALIDQVAIRYAIIPLA 216


>Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical
           protein H21P03.3b protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -2

Query: 468 MFVGSLCPGRYFIFSWVS-LIISVNFFPSIIS--SYTHIVTLS 349
           +F+G   P R++I  W+S L+ SV     ++S   YT  V LS
Sbjct: 345 LFIGEYSPRRFYILHWLSWLVCSVGVIFLVLSHGHYTIDVILS 387


>Z95619-2|CAB09114.1|  450|Caenorhabditis elegans Hypothetical
           protein H21P03.3a protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -2

Query: 468 MFVGSLCPGRYFIFSWVS-LIISVNFFPSIIS--SYTHIVTLS 349
           +F+G   P R++I  W+S L+ SV     ++S   YT  V LS
Sbjct: 305 LFIGEYSPRRFYILHWLSWLVCSVGVIFLVLSHGHYTIDVILS 347


>U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical
           protein F02C9.3 protein.
          Length = 1064

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 484 IRNSNYVCWKFMPRKVFYIFMGFINNFCQFLSFNNLL 374
           +RN  Y  + F+P  +F  F  F+N +   ++F+ L+
Sbjct: 98  VRNQKYNIFSFVPVVLFQEFKFFLNLYFLIMAFSQLV 134


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
            interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 312  IFAIAEPQFPEPTIQTRFFNCFSAII-LFLIGTRFSKN 202
            +++  + +F   TI  RFF CFS I  LFL+  R   N
Sbjct: 925  LYSKEKRKFTRKTIFNRFFLCFSHIFGLFLVKIRIFYN 962


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,384,657
Number of Sequences: 27780
Number of extensions: 287509
Number of successful extensions: 878
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)