Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N24
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...   189   1e-50
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.13 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.7  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score =  189 bits (461), Expect = 1e-50
 Identities = 85/107 (79%), Positives = 94/107 (87%)
 Frame = +2

Query: 257 KNRVCIVGSGNWGSAIAKIVGRNAARLPNFEDRVTMWVYEEIIEGKKLTEIINETHENIK 436
           K R+CIVGSGNWGS IAKI+G NAA   NFEDRVTM+VYEEII GKKLTEIINETHEN+K
Sbjct: 4   KLRICIVGSGNWGSTIAKIIGINAANFSNFEDRVTMYVYEEIINGKKLTEIINETHENVK 63

Query: 437 YLPGHKLPTNIVAVPDVVEAAKDADLLILVVPHQFVRTICSTLLGKI 577
           YLPGHKLP NI+A+PDVVEAAKDAD+L  VVPHQF++ ICS L GKI
Sbjct: 64  YLPGHKLPPNIIAIPDVVEAAKDADILTFVVPHQFIKRICSALFGKI 110


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 393 FPSIISSYTHIVTLSSKFGRRAAFRPTIFAIAEPQFP 283
           F S+  ++    T  S FG+  A  PT+F+   P+FP
Sbjct: 332 FWSLRKAFARKKTDYSSFGKILATEPTLFSNVTPKFP 368


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 396 FFPSIISSYTHIVTLSSKFGR 334
           FF +   SY HI T S++F R
Sbjct: 99  FFVNEKQSYFHIATTSNEFIR 119


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 396 FFPSIISSYTHIVTLSSKFGR 334
           FF +   SY HI T S++F R
Sbjct: 99  FFVNEKQSYFHIATTSNEFIR 119


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 396 FFPSIISSYTHIVTLSSKFGR 334
           FF +   SY HI T S++F R
Sbjct: 38  FFVNEKQSYFHIATTSNEFIR 58


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 234 LFLIGTRFSKNKTLK 190
           LF+IG  FS NK+ K
Sbjct: 33  LFMIGGVFSNNKSKK 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,541
Number of Sequences: 438
Number of extensions: 3515
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)