Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N22
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    31   0.085
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    29   0.45 
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   3.2  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    26   4.2  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   7.3  

>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 31.5 bits (68), Expect = 0.085
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +1

Query: 355 YSKNTVQS-HRN*IAASIHFW--TVSHRAWTR-THAAIS--LQSRTVPTSSSTSYATKME 516
           Y+ N+  S H      S   W  + S +AW R T  ++S  ++S+T+P   STSY  ++E
Sbjct: 18  YNGNSFNSIHATSFGMSPQSWGNSFSGQAWLRDTIPSLSNVVESQTIPEEDSTSYLNRLE 77

Query: 517 TESLCSSLR 543
            E+ C   R
Sbjct: 78  -EAFCRDFR 85


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 60  CTLISIHYRI-SVIMIWKTLIFAFLTIGVLDQDY 158
           CT+ S+ + + S+I+ W  LIF F+TIG+   D+
Sbjct: 102 CTINSLRFPVLSIIVGW--LIFLFITIGISASDF 133


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +3

Query: 354 VFKKYCAKSPQLNSCINSLLDGVSPCVDPNARGHLASVKNSTNQL 488
           V K     +PQL+  + +LL+ +SP  D +    ++ +K++T+++
Sbjct: 103 VDKSLLGPTPQLSRRVLNLLEDMSPIADSHV-DQISDIKHNTSEI 146


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 224 TIFFALVCEHLF*LFPLIF 168
           T+F+AL+ +HL  + P+I+
Sbjct: 85  TLFYALISQHLIEMIPIIY 103


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 466 SRTVPTSSSTSYATKMETESLCSSLRAV 549
           S +VP+SSS+ +++ M T  L SS   V
Sbjct: 147 SSSVPSSSSSYHSSSMTTSGLSSSASIV 174


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +3

Query: 168 EDKREQLKQMLTDQCKKYGA--EDKVATVDAA-GRAFVECVKELVDVNQLKNEIEEAKPN 338
           E +R+ LKQ   +      +  E ++ +++++   +  ECV     +N+L ++I+E K  
Sbjct: 543 ELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLK 602

Query: 339 GALDEVFKKY 368
             L+E  KKY
Sbjct: 603 --LNEANKKY 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,022
Number of Sequences: 5004
Number of extensions: 37655
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)