Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N22
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989... 30 1.4
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930... 29 2.4
02_03_0134 - 15596379-15597689 29 2.4
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 28 4.3
07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026 27 9.9
03_06_0753 + 36015026-36015256,36015780-36015885,36016132-360161... 27 9.9
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 9.9
>01_07_0009 -
40397276-40397534,40397637-40398745,40398834-40398932,
40399043-40399272,40399534-40399585,40399679-40399865,
40399987-40400193,40400283-40400449,40400804-40401094,
40401166-40401636
Length = 1023
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +3
Query: 192 QMLTDQCKKYGAEDKVATVDAAGRAFVECVKELVDVNQLKN-EIE-EAKP---NGALDEV 356
QML D +D V T A+G+A V + E++D ++++ ++E E P D++
Sbjct: 462 QMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELETVPFDLRTVCDDI 521
Query: 357 FKKYCAKSPQ 386
+C K+ +
Sbjct: 522 LSLFCGKAQE 531
>10_08_0459 +
18092656-18092724,18092827-18092886,18092970-18093038,
18093134-18093178,18093706-18094332,18094424-18094597,
18094688-18094991,18095070-18095161,18095253-18095319,
18095407-18095478,18095613-18095830,18095979-18096113,
18096225-18096520,18096603-18096774,18096860-18096958,
18097048-18097179,18097273-18097373,18097460-18097649,
18097713-18097751
Length = 986
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = -3
Query: 119 YQSLP---DHDDTNTIVNTNEGTNA 54
+QSLP D+D NT++N N GT+A
Sbjct: 604 FQSLPETPDNDTCNTVINENPGTSA 628
>02_03_0134 - 15596379-15597689
Length = 436
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +3
Query: 168 EDKREQLKQMLTDQCKKYGAEDKVATVDAAG---RAFVECVKELVDVNQLKNEIEEAKPN 338
EDK E++ ++++++ + + D A + V+ VKE +D ++LK E +
Sbjct: 277 EDKNEEVVELISEEKHQVPDNNSFNGRDNADIGINSKVQAVKEAIDNSELKEAANETELK 336
Query: 339 GALDEVFKKYCAKSPQLNSCINS 407
A+DE +L +N+
Sbjct: 337 EAVDETELNEVVSESELYKDVNT 359
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 403 IHFWTVSHRAWTRTHAAISLQSRTVPTSSSTSYATKMETESL 528
+HFW + + T+A + L S VP S T YA + T +L
Sbjct: 709 LHFWVILFASLITTNAYVMLVSALVP-SYITGYAVVIATTAL 749
>07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026
Length = 453
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +3
Query: 294 DVNQLKNEIEEAKPNGALDEVFKKYCAKSPQLNSCIN 404
++ ++K+ E PNG +++++ + +K+P + IN
Sbjct: 389 EIKKVKHYFEYEDPNGPVNQIWHQVSSKAPLIKLLIN 425
>03_06_0753 +
36015026-36015256,36015780-36015885,36016132-36016192,
36016278-36016573,36016654-36016793,36016880-36016954,
36017044-36017134,36017677-36017880,36018409-36018453,
36018745-36018830
Length = 444
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = +3
Query: 282 KEL--VDVNQLKNEIEEAKPNG 341
KEL VD NQLKN + + PNG
Sbjct: 244 KELGTVDTNQLKNNMADISPNG 265
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 297 VNQLKNEIEEAKPNGALDEVFKKYCAKSPQLNSCINSLLDGVSPCVDPN 443
+ +L EIEE G LDE + K +L + L + +S VDPN
Sbjct: 962 LRKLTAEIEEEPIQGWLDEHYHLMRNKVCELGVRLKFLEEAISGSVDPN 1010
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,107,272
Number of Sequences: 37544
Number of extensions: 242836
Number of successful extensions: 782
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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