Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N19
(491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0151 - 1346942-1347682 29 1.5
01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123... 29 2.0
08_02_0809 - 21426670-21426753,21427188-21427317,21427403-214274... 29 2.7
01_01_0153 - 1352982-1353731 29 2.7
04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879... 28 4.7
03_02_0148 - 5928703-5928931,5929099-5929171,5929288-5929408,592... 28 4.7
11_01_0667 + 5436764-5437384,5437684-5437923,5438037-5438159,543... 27 6.2
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 27 6.2
03_05_1110 - 30466886-30467317,30467522-30467603,30467749-30467810 27 6.2
01_07_0264 - 42388455-42388565,42388656-42388688,42388792-423889... 27 6.2
12_02_0165 - 14758453-14758752,14759991-14760770 27 8.2
10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697 27 8.2
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116... 27 8.2
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 27 8.2
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365... 27 8.2
01_01_0156 - 1364856-1365401 27 8.2
>01_01_0151 - 1346942-1347682
Length = 246
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Frame = -3
Query: 480 WCDEPRPSAYRTGYTCACE---CNQQVRP-CVCLRVI*EPCATCNGCPRVMLARPP---C 322
W +P P + C+ CN+ P C C+ + + A C C RV + PP C
Sbjct: 169 WGADPGPLCTPRPWGKCCDKAFCNKMNPPTCRCMDEVNKCAAACKDCQRVESSEPPRYVC 228
Query: 321 RD 316
+D
Sbjct: 229 KD 230
>01_06_0433 -
29311749-29311859,29311958-29312116,29312208-29312315,
29312449-29312531,29312617-29312786,29312833-29312903,
29313170-29313302,29313483-29313749,29313865-29313969,
29314053-29314144,29314263-29314363,29314426-29314552,
29315025-29315140,29315222-29315291,29315476-29315685
Length = 640
Score = 29.1 bits (62), Expect = 2.0
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 167 GLLLTISTLWRLIVLIVIPLSVYVGVFYAHLIMLPKAGPHDSVMTSAFQASLQ-----GG 331
G+LL I +IVL +I L + + YAHL + K V+T+ + A++Q GG
Sbjct: 324 GVLLRIRNN-AIIVLAIICLQLPFELAYAHLYAITKTEALRYVLTAVYLAAIQYYTRIGG 382
Query: 332 LASIT 346
S+T
Sbjct: 383 KVSVT 387
>08_02_0809 -
21426670-21426753,21427188-21427317,21427403-21427452,
21428209-21428349,21428907-21429047,21429144-21429251
Length = 217
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 374 GSQITLRHTHGRTCWLHSHAHVYPV 448
GS I L+H R WLHSH H P+
Sbjct: 102 GSIIRLQHMRTRK-WLHSHLHASPL 125
>01_01_0153 - 1352982-1353731
Length = 249
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Frame = -3
Query: 480 WCDEPRPSAYRTGYTCACE---CNQQVRP-CVCLRVI*EPCATCNGCPRVMLARPP---C 322
W +P P + C+ CN+ P C C+ + E C C RV + PP C
Sbjct: 172 WGADPGPFCTPRPWGDCCDKAFCNKMNPPTCRCMDEVKECADACKDCQRVESSEPPRYVC 231
Query: 321 RD 316
+D
Sbjct: 232 KD 233
>04_04_1113 -
30986757-30986780,30986781-30987273,30987437-30987959,
30988361-30988615,30988812-30988926,30989026-30989078,
30989213-30989265,30989419-30989473,30989549-30989599,
30989776-30990024,30990122-30990350,30990994-30991305
Length = 803
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 40 VIHWFCIFGLLFFSKIFRAIY 102
V++WF +F L F +FR+IY
Sbjct: 431 VVNWFLLFSCLGFILLFRSIY 451
>03_02_0148 -
5928703-5928931,5929099-5929171,5929288-5929408,
5929907-5929952,5930361-5930571,5930837-5930986,
5931122-5931179,5931285-5931400,5931986-5932091
Length = 369
Score = 27.9 bits (59), Expect = 4.7
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +2
Query: 95 LYTYYLSVFLVGRHLWRRFGHLESGLLLTISTLWRLIVLIVIPLSVYVGV----FYAHLI 262
+Y YY +F G +WR G L+ STL R + + ++ Y + Y
Sbjct: 188 MYNYYNGMFHAGCSIWRDHG-LKGLYAGYWSTLARDVPFAGLMVTFYEAMKELTEYGKRK 246
Query: 263 MLPKAGPHDSVMTSAFQASLQGGLA 337
LP++ H S S+F+ L GGLA
Sbjct: 247 YLPESNLHAS---SSFEGLLLGGLA 268
>11_01_0667 +
5436764-5437384,5437684-5437923,5438037-5438159,
5438301-5438480
Length = 387
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 209 LIVIPLSVYVGVFYAHLIMLPKAGPHDSVMTSAFQASLQGGLASITRGQPLHVAHG 376
L+V+ + Y G H IM PK GP + A + G A + +G + V G
Sbjct: 236 LLVMAANFYFGDLSKHGIMRPKMGPLLLKSQTGRSAVIDVGTARLIKGGVIKVFQG 291
>03_06_0565 +
34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 105 YVYSPEYFTEKQQPKNT--EPMDNQIAAINPDVLASC 1
Y+ +Y TE+ +PK EP I + NP ++A C
Sbjct: 272 YLKHSQYNTEQIKPKFRLPEPFSRPILSANPSIIARC 308
>03_05_1110 - 30466886-30467317,30467522-30467603,30467749-30467810
Length = 191
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 399 VCLRVI*EPCATCNGCPRVMLARPPCRDAW 310
V L VI CN C V+ R P RD+W
Sbjct: 10 VILAVIMHVLTWCNWCSSVVWPRQPRRDSW 39
>01_07_0264 -
42388455-42388565,42388656-42388688,42388792-42388905,
42389011-42389100,42389173-42389268,42389363-42389404,
42389498-42389608,42392258-42392440,42392518-42392961
Length = 407
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 389 E*SENHAQHAMVVHVLCLQDPPVEMPGMHLSSHYHGAQLW 270
E S N+ HAM + V+ QD P++ ++ H +LW
Sbjct: 57 EESTNNTVHAMDMGVVTRQDDPLKASEEDINQHKDEQELW 96
>12_02_0165 - 14758453-14758752,14759991-14760770
Length = 359
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 320 EMPGMHLSSHYHGAQLWE 267
E+PG + H HG LWE
Sbjct: 141 ELPGSSIFEHTHGRSLWE 158
>10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697
Length = 375
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -3
Query: 432 ACECNQQVRPCVCLRVI*EPCATCNGCPRVMLAR 331
A E + + PC C PC +C P AR
Sbjct: 18 AAEASWECDPCACAATAGSPCGSCGAPPPWACAR 51
>05_06_0106 -
25611239-25611295,25611388-25611477,25611582-25611669,
25611757-25611836,25611968-25612120,25612403-25612546,
25612633-25612884,25612985-25613116,25613207-25613287,
25613368-25613488,25613930-25614025,25614195-25614298,
25614481-25614567,25614690-25614803,25614871-25614930,
25615007-25615102,25615316-25615366,25615457-25615562,
25615642-25615713,25616117-25616172,25616446-25616508,
25616636-25616764
Length = 743
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 152 GHLESGLLLTISTLWRLIVLIVIPLSV 232
G + GL LT T+W L+ + IPLSV
Sbjct: 92 GTVYPGLTLTAGTIWWLLNSLNIPLSV 118
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 486 CCWCDEPRPSAYRTGYTCACECNQQVRPCVCLRVI*EPCATCNGCPRVMLARPP 325
CC C++P+P C CE + +PC C + +PC C +PP
Sbjct: 108 CCSCEKPKPKP----KPCHCE---KPKPCHCEKP--KPCEKPPPCKPEEPPKPP 152
>03_01_0475 +
3656628-3656791,3656944-3657013,3657114-3657310,
3657409-3657484,3657794-3657877,3658247-3658326,
3658422-3658548,3658727-3658786,3658874-3658924,
3659013-3659171,3659296-3659428,3659545-3659717
Length = 457
Score = 27.1 bits (57), Expect = 8.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 38 WLSIGSVFLGCCFSVKY 88
W++ S+F+GCCF V +
Sbjct: 200 WIAYVSIFVGCCFLVVF 216
>01_01_0156 - 1364856-1365401
Length = 181
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Frame = -3
Query: 480 WCDEPRPSAYRTGYTCACE---CNQQVRP-CVCLRVI*EPCATCNGCPRVMLARPP---C 322
W +P P + C C + + P C C + + A C C RV ++PP C
Sbjct: 104 WGADPGPFCTPRPWGDCCTNTTCTRSIPPICRCNDKVKKCAAACKDCKRVKSSKPPRYVC 163
Query: 321 RD 316
+D
Sbjct: 164 QD 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,143,787
Number of Sequences: 37544
Number of extensions: 308295
Number of successful extensions: 769
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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