Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N19
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.33 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.33 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   5.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   9.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 66  VAVFQ*NIQGYI---HITYQFSWWGDISG 143
           V VF  NI  ++   ++TY++ WW  + G
Sbjct: 504 VGVFTFNIIKFVPVKYLTYEYPWWSHVLG 532


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 66  VAVFQ*NIQGYI---HITYQFSWWGDISG 143
           V VF  NI  ++   ++TY++ WW  + G
Sbjct: 557 VGVFTFNIIKFVPVKYLTYEYPWWSHVLG 585


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 173 LLTISTLWRLIVLIVIPLSVYVGVFYAHLIMLPKAG 280
           L+ ++  W++I LIV+   V + + Y   I+L  AG
Sbjct: 392 LVLLNFGWQMICLIVVIALVSI-IMYIAFIILQYAG 426


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 59  FLGCCFSVKYSGLYTYYLSVFLV 127
           F GCC +++ S   T   + FL+
Sbjct: 67  FFGCCGAIRESHCMTITFASFLL 89


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 299 SSHYHGAQLW 270
           SSH+HG++ W
Sbjct: 402 SSHHHGSKSW 411


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 56  VFLGCCFSVKYSGLYTYYLSVFLVGRHLWRR 148
           V+LG CF + ++ L  Y    ++  R   R+
Sbjct: 285 VYLGTCFVMVFASLLEYATVGYMAKRIQMRK 315


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 56  VFLGCCFSVKYSGLYTYYLSVFLVGRHLWRR 148
           V+LG CF + ++ L  Y    ++  R   R+
Sbjct: 285 VYLGTCFVMVFASLLEYATVGYMAKRIQMRK 315


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 56  VFLGCCFSVKYSGLYTYYLSVFLVGRHLWRR 148
           V+LG CF + ++ L  Y    ++  R   R+
Sbjct: 224 VYLGTCFVMVFASLLEYATVGYMAKRIQMRK 254


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 64  GLLFFSKIFRAIYILLISFPGGETSL 141
           GLL F ++FR + + +I +   E  L
Sbjct: 45  GLLVFYEVFRYLELAMIRWKDTEIGL 70


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 344 TRGQPLHVAHGSQITLRHTHGR 409
           T G P H  H    +L+H H R
Sbjct: 346 TMGPPHHHHHHQTQSLQHLHYR 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,068
Number of Sequences: 438
Number of extensions: 3492
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)