Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N18
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0992 + 23180165-23180720,23180732-23181162 31 0.88
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 3.5
07_03_1226 - 24998276-24998375,24998728-24998849,24998936-249997... 29 3.5
02_04_0081 + 19541691-19541798,19541865-19542062,19542133-195421... 29 3.5
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 29 3.5
03_05_0625 - 26225201-26225879,26226706-26227553 28 4.7
05_05_0256 - 23647736-23648947 28 6.2
11_05_0093 + 18992027-18993514 27 8.2
10_08_1019 - 22299800-22299946,22300040-22300109,22300930-223010... 27 8.2
07_01_0468 + 3537669-3537890,3539003-3539130,3539398-3539621,353... 27 8.2
07_01_0288 - 2097361-2097855 27 8.2
>07_03_0992 + 23180165-23180720,23180732-23181162
Length = 328
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 498 DPLLHGAAARDRVPAPGGGQHAAHKRTDHRARLIRLLHLT 379
D L HG RD V +HA H + + +A + R +H T
Sbjct: 156 DELRHGGRRRDHVRPDQQAKHARHPQDEGQASVTRTMHRT 195
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = +1
Query: 34 TLKRCTYNSR-----YDLVTKLLKMQQLEDEEELAYNAASQDHDASSV--VLGDGRP 183
TL+ CT DLV KLL+ L D + N+ S A+S+ +LGD +P
Sbjct: 1649 TLQECTEERNRIRVELDLVKKLLENMALTDNPTVPDNSGSCTSGATSIGQILGDAKP 1705
>07_03_1226 -
24998276-24998375,24998728-24998849,24998936-24999702,
25000447-25000618
Length = 386
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +3
Query: 30 NNAEKVYLQLKV*SRHKAVEDATTGRRRGARI 125
+ AE+V+++ +RH AV++A G RRGA++
Sbjct: 207 HGAERVHVEA---ARHAAVDEAPPGARRGAQV 235
>02_04_0081 +
19541691-19541798,19541865-19542062,19542133-19542191,
19542274-19542994,19543382-19543723
Length = 475
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +1
Query: 448 SWRRYAVARGCTVQQWVGDFAHRVAQLAAVSDTVAASGAQRL 573
+W V GC ++ +H++A+ AV++ A RL
Sbjct: 177 TWEELQVEMGCILEAGARGISHKIAEARAVAEAAVNERADRL 218
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +1
Query: 382 EMKQTNETRAMVGSLVRGMLPSSWRRYAVARGCTVQQWVGDFAHRVAQLAAVSDT 546
EMK+TN L + + YA+ V+ WV D + A + ++D+
Sbjct: 394 EMKETNHAHLQAEFLAPDDCTAGDQNYALPIKVEVESWVADIRKKEAAMQTITDS 448
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 428 CAACCPPPGAGTRS 469
C+ C PPPG+GT S
Sbjct: 190 CSCCLPPPGSGTSS 203
>05_05_0256 - 23647736-23648947
Length = 403
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 563 APEAATVSETAAS-CATRCAKSPTHCCTVQPRATAYRR 453
AP+ AT +ETAAS C R + T C +PR +RR
Sbjct: 356 APDGATPAETAASGCWGR--RRRTTSCRSKPRRATHRR 391
>11_05_0093 + 18992027-18993514
Length = 495
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 230 CYRNNYRRYVVLWRTSRTRCIVSSSVKW 313
C +N+ RR+V+ +R R CI +K+
Sbjct: 403 CLKNSLRRFVIQFRMDRPNCIGVKLIKF 430
>10_08_1019 -
22299800-22299946,22300040-22300109,22300930-22301066,
22301142-22301195,22301638-22301694,22301814-22301846,
22301942-22302067,22302162-22302815,22303042-22303166,
22303770-22303935
Length = 522
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 124 YNAASQDHDASSVVLGDGRPAWMKTL 201
++ S DH AS+V +G G W++ L
Sbjct: 239 HSTQSSDHSASAVAVGRGGSIWVRVL 264
>07_01_0468 +
3537669-3537890,3539003-3539130,3539398-3539621,
3539660-3540062,3540398-3540473
Length = 350
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 504 VPDPLLHGAAARDRVPAPGGGQHAAHKRT 418
+P P HGAA + R P P A + RT
Sbjct: 40 LPPPAFHGAAVQRRRPRPPPRDEATNNRT 68
>07_01_0288 - 2097361-2097855
Length = 164
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -1
Query: 522 RDAVREVPDPLLHGAAARDRVPAPGGGQHAAHKRTDHRAR 403
RD+ + +P PLL R RVPA G A R DH R
Sbjct: 28 RDSPQRLPPPLLRDRQHRRRVPA--AGVPVAGVRGDHVLR 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,688,405
Number of Sequences: 37544
Number of extensions: 292373
Number of successful extensions: 1105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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