Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N18
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 114 4e-26
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 114 4e-26
Z75550-11|CAE17966.1| 133|Caenorhabditis elegans Hypothetical p... 30 1.4
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 28 4.2
AL022716-4|CAA18773.1| 703|Caenorhabditis elegans Hypothetical ... 27 7.3
Z79600-1|CAB01873.1| 239|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in ... 27 9.6
AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in ... 27 9.6
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 114 bits (275), Expect = 4e-26
Identities = 56/143 (39%), Positives = 79/143 (55%)
Frame = +1
Query: 109 EEELAYNAASQDHDASSVVLGDGRPAWMKTLHQTATNWXXXXXXXXXXXXXXVENIKDPL 288
+EELA+N ++ + +P WM L + A W VENIKDPL
Sbjct: 4296 DEELAFNEDGKE---------EVKPQWMAQLGELAKQWLQLLPKEIVKMRRTVENIKDPL 4346
Query: 289 YRFFEREVAAGASLLQQVLHDLRNVISICQGEMKQTNETRAMVGSLVRGMLPSSWRRYAV 468
+RFFEREV G+ LL+ + DL + ++C+ E KQ NETRA+ SL +G +P+ W+RY V
Sbjct: 4347 FRFFEREVNLGSQLLKDIRRDLNEISAVCRAEKKQNNETRALAASLQKGEVPTGWKRYTV 4406
Query: 469 ARGCTVQQWVGDFAHRVAQLAAV 537
R TV W+ D R+ QL +
Sbjct: 4407 PREVTVMDWMTDLNERLKQLIRI 4429
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 9 PSWLGLPNNAEKVYL 53
P+WLGLPNNAEKV L
Sbjct: 4266 PAWLGLPNNAEKVLL 4280
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 114 bits (275), Expect = 4e-26
Identities = 56/143 (39%), Positives = 79/143 (55%)
Frame = +1
Query: 109 EEELAYNAASQDHDASSVVLGDGRPAWMKTLHQTATNWXXXXXXXXXXXXXXVENIKDPL 288
+EELA+N ++ + +P WM L + A W VENIKDPL
Sbjct: 4296 DEELAFNEDGKE---------EVKPQWMAQLGELAKQWLQLLPKEIVKMRRTVENIKDPL 4346
Query: 289 YRFFEREVAAGASLLQQVLHDLRNVISICQGEMKQTNETRAMVGSLVRGMLPSSWRRYAV 468
+RFFEREV G+ LL+ + DL + ++C+ E KQ NETRA+ SL +G +P+ W+RY V
Sbjct: 4347 FRFFEREVNLGSQLLKDIRRDLNEISAVCRAEKKQNNETRALAASLQKGEVPTGWKRYTV 4406
Query: 469 ARGCTVQQWVGDFAHRVAQLAAV 537
R TV W+ D R+ QL +
Sbjct: 4407 PREVTVMDWMTDLNERLKQLIRI 4429
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 9 PSWLGLPNNAEKVYL 53
P+WLGLPNNAEKV L
Sbjct: 4266 PAWLGLPNNAEKVLL 4280
>Z75550-11|CAE17966.1| 133|Caenorhabditis elegans Hypothetical
protein T22C1.12 protein.
Length = 133
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 305 RSKKRYSGSLMFSTVRR-NVGSCCGSSCNQLVAVWCS 198
RS Y+ + FSTVRR ++ CNQ+ VW S
Sbjct: 82 RSSVYYTNGVNFSTVRRHDLSDKYSIRCNQMTGVWLS 118
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 265 VENIKDPLYRFFEREVAAGASLLQQVLHDLRNVISICQGEMKQ 393
+E IK+P Y F+ E + A +Q++ ++ N QG Q
Sbjct: 2432 IELIKNPTYNFWRYEFTSCAPEIQRLFQNVANTCVPAQGSQPQ 2474
>AL022716-4|CAA18773.1| 703|Caenorhabditis elegans Hypothetical
protein C24F3.4 protein.
Length = 703
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +1
Query: 445 SSWRRYAVARGCTVQQWVGDFAHRVAQLAAVSDTVAASGAQ 567
+ W R CTV W DF ++ + AA GA+
Sbjct: 2 NQWDRRCRVATCTVNNWALDFKGNYERIVKTCEEAAALGAR 42
>Z79600-1|CAB01873.1| 239|Caenorhabditis elegans Hypothetical
protein F59C6.2 protein.
Length = 239
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 62 GMISSQSC*RCNNWKTKRSSH 124
G S C +CNNWK +SH
Sbjct: 35 GTPSDSFCIKCNNWKGPSTSH 55
>AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 7 protein.
Length = 438
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 539 ETAASCATRCAKSPTHCC-TVQPRATAYRRQEEGS 438
+ AA C T C S ++ C T QP TA ++ + S
Sbjct: 384 QPAAQCQTACQSSCSNSCQTAQPATTACQQSPQQS 418
>AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 6 protein.
Length = 388
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 539 ETAASCATRCAKSPTHCC-TVQPRATAYRRQEEGS 438
+ AA C T C S ++ C T QP TA ++ + S
Sbjct: 334 QPAAQCQTACQSSCSNSCQTAQPATTACQQSPQQS 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,598,548
Number of Sequences: 27780
Number of extensions: 217239
Number of successful extensions: 677
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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