Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N18
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   3.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.8  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   5.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.8  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/62 (22%), Positives = 26/62 (41%)
 Frame = +1

Query: 328 LLQQVLHDLRNVISICQGEMKQTNETRAMVGSLVRGMLPSSWRRYAVARGCTVQQWVGDF 507
           +L+  + + + V+ +   E     ET +       G   S  +R  V+    +Q  +GDF
Sbjct: 280 ILRPYVPEFKGVLDVKDVEEGNVEETNSEETHQKDGSSDSVIKRTVVSSYLQLQDLLGDF 339

Query: 508 AH 513
            H
Sbjct: 340 EH 341


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/62 (22%), Positives = 26/62 (41%)
 Frame = +1

Query: 328 LLQQVLHDLRNVISICQGEMKQTNETRAMVGSLVRGMLPSSWRRYAVARGCTVQQWVGDF 507
           +L+  + + + V+ +   E     ET +       G   S  +R  V+    +Q  +GDF
Sbjct: 195 ILRPYVPEFKGVLDVKDVEEGNVEETNSEETHQKDGSSDSVIKRTVVSSYLQLQDLLGDF 254

Query: 508 AH 513
            H
Sbjct: 255 EH 256


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/62 (22%), Positives = 26/62 (41%)
 Frame = +1

Query: 328 LLQQVLHDLRNVISICQGEMKQTNETRAMVGSLVRGMLPSSWRRYAVARGCTVQQWVGDF 507
           +L+  + + + V+ +   E     ET +       G   S  +R  V+    +Q  +GDF
Sbjct: 514 ILRPYVPEFKGVLDVKDVEEGNVEETNSEETHQKDGSSDSVIKRTVVSSYLQLQDLLGDF 573

Query: 508 AH 513
            H
Sbjct: 574 EH 575


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 493 WVGDFAHRVAQLAAV 537
           WVG F H + Q+  +
Sbjct: 9   WVGGFCHSIIQIPVI 23


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 428 CAACCPPPGAGTRSR 472
           C AC PPP     SR
Sbjct: 389 CVACSPPPRQTPPSR 403


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 338 CCRREAPAATSRSKKRYSGSLM 273
           C  R+ PA+ + S K   GS+M
Sbjct: 881 CSDRKRPASQATSVKAEPGSIM 902


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,846
Number of Sequences: 438
Number of extensions: 3073
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)