Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N17
(484 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 89 2e-19
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 24 1.3
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 2.0
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 4.5
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 25 4.5
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 6.0
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 6.0
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 6.0
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 6.0
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 7.9
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 25 7.9
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 7.9
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 89.4 bits (212), Expect = 2e-19
Identities = 39/94 (41%), Positives = 62/94 (65%)
Frame = +1
Query: 181 LNIFTLNCWGIPFVSKNRKERFQAISKYLVESSHNIVCLQEVWSEKDYLFLKETLKTVLP 360
L + + NCWG+ FVSK R ER +A+ + L + ++IV LQEVWS D+ ++ + L
Sbjct: 9 LRVLSFNCWGLRFVSKYRTERLKAVGEKLAKCDYDIVLLQEVWSIYDFQEIRNLVSCNLV 68
Query: 361 YSHYFYSGVLGSGLCVFSKWVIQDVFFHQWPLNG 462
YS +F+S +G+GL +FSK+ I + +++PLNG
Sbjct: 69 YSRFFHSAAMGAGLAMFSKFPIIESSMNKYPLNG 102
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 24.2 bits (50), Expect(2) = 1.3
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 196 LNCWGIPFVSKNRK 237
LNCW +PF ++K
Sbjct: 70 LNCWNVPFSDLSKK 83
Score = 21.4 bits (43), Expect(2) = 1.3
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +1
Query: 118 NKRFGYLCSTRNISISVMEFT----LNIFTLNCW 207
++ FGY+C + N+ +V+ + LN F + W
Sbjct: 21 SQNFGYVCGSINLGTNVIAQSPTKPLNFFHSSRW 54
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 26.6 bits (56), Expect = 2.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 35 PSESYTEPFQYLYCKLIKPEVDPTFEFLINGLD 133
P E + +++ + +KPE DP ++ GLD
Sbjct: 203 PGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLD 235
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +1
Query: 268 VESSHNIVCLQEVWSEKDYLFLKETLKTVLPYSHYFYSGVLGSGLCVFSKW 420
++ H I+ ++ +++K+ + + +T Y G+L +C FS W
Sbjct: 600 LQEEHTILSIKASYNKKESHLINQAYET---QEAQVYKGMLKCSVCNFSNW 647
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.4 bits (53), Expect = 4.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 127 FGYLCSTRNISISVMEFTLNIFTLNCWGIPFVSKNRKERFQAISKYLV 270
F +SI + ++F N + +SKNR+ Q ISKYL+
Sbjct: 495 FNVFVKMAELSILLQNVLQHLF--NARAVMTMSKNRRTVAQKISKYLI 540
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 6.0
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 53 EPFQYLYCKLIKPEVDPTFEFLINGLDIYVRLETY 157
EPF +Y IKP D EF Y L Y
Sbjct: 323 EPFHNIYSSFIKPIDDRRLEFDEQSKSFYGSLSRY 357
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.0 bits (52), Expect = 6.0
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 235 KERFQAISKYLVESSHNIVCLQEVWSEKDYLFLKETLKTVLP 360
KER+ +SK V + V LQE E D + L T++ LP
Sbjct: 422 KERYFLLSKSFVGKNQFRVYLQEFDFEADKVNLISTIELELP 463
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.0 bits (52), Expect = 6.0
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Frame = +1
Query: 133 YLCSTRNISISVMEFTLNIFTLNCWG-----IPFVSKNRKERFQAISKYLVESSHNIVCL 297
+ ST +S+ +F +NI WG P S+ + +F + V SS L
Sbjct: 248 FAVSTAQVSVMFPKFYINIMAALSWGTALFRFPIFSEPAEYQFADFADLSVASSSYADYL 307
Query: 298 QE---VWSEKDYLFLKET--LKTVLPYSHYFYSGVLGSGLCVFSKWVIQDVF 438
+ ++S D + + L ++ Y ++ + + L +F KW++ +F
Sbjct: 308 PKSYGMYSFLDSIGIGTACWLPFLIVMVIYLFAALFVALLVIFLKWLMSRIF 359
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 6.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 297 KTDYIVGTFNQILRYGLKSLFSIFRYKWYTPTIQGEY 187
K Y+V NQ++++GL L I R P I ++
Sbjct: 243 KDSYVVKAGNQLIQHGLIRLLGIRRVFENDPEIDAQF 279
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 7.9
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 139 CSTRNISISVMEFTLNIFTLNCWGIPFVSKNRKERFQAISKYLVESSHNIVCL 297
CS + + ++EFT F L+ P V + + + +++YL+ SSHN L
Sbjct: 412 CSNDDSKMGLIEFTS--FLLSPHNSPVVPVIQ-DMSRPLNEYLISSSHNTYLL 461
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +1
Query: 235 KERFQAISKYLVESSHNIVCLQEVWSEKDYLFLKETLKTVLPYS 366
+ERF+ I+ +H I+ + +V + + +K+ L+ + Y+
Sbjct: 67 QERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYA 110
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 238 ERFQAISKYLVESSHNIVCLQEVWSEKDYLFLKE 339
ERF+ I K H+ +++W EK YLF+++
Sbjct: 31 ERFRVIIKSNAHK-HDPSDKRQIWLEKYYLFVRQ 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,283
Number of Sequences: 5004
Number of extensions: 46817
Number of successful extensions: 124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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