Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N17
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1093 - 24271826-24273427 32 0.28
01_06_0403 - 29060712-29060732,29061260-29061334,29061596-290617... 30 1.1
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 28 3.4
06_01_0793 - 5918912-5919793,5919830-5920285 28 4.5
09_02_0289 - 6941154-6941399,6941630-6941722,6941801-6941884,694... 27 6.0
08_02_0294 - 15432424-15432669,15433007-15433099,15433168-154332... 27 6.0
07_03_0008 + 12303536-12303893,12303910-12304176,12304635-123049... 27 7.9
03_05_0829 + 28025760-28025846,28026366-28026473,28026721-280267... 27 7.9
>08_02_1093 - 24271826-24273427
Length = 533
Score = 31.9 bits (69), Expect = 0.28
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 484 HDESYVYTHSEATGEKTHLGSP 419
HDES ++ + +ATGE HL SP
Sbjct: 417 HDESSIFLYDDATGEVFHLNSP 438
>01_06_0403 -
29060712-29060732,29061260-29061334,29061596-29061762,
29061841-29061996,29062412-29062535,29062949-29063047,
29063155-29063254,29063331-29063380,29063461-29063562,
29063709-29063786,29063865-29064131,29064225-29064321,
29064446-29064746,29066714-29066805,29066890-29067005,
29067445-29067519,29067846-29067911,29068206-29068262,
29068381-29068430,29068518-29068688,29068969-29069060,
29069124-29069281
Length = 837
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 26 QLEPSESYTEPFQYLYCKLIKPEVDPTFE 112
Q PSESY Q+ Y +L +P+ P FE
Sbjct: 242 QPTPSESYVSSDQFQYTRLDRPDDQPCFE 270
>01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 208 GIPFVSKNRKERFQAISKYLVESSHNIVCLQEVWSEKDYLFLKETL 345
GI NRKE F+A++ + + N + L V S D+L + ++
Sbjct: 966 GITSHQMNRKEHFEALNSGMFSAKWNALQLGSVSSSADFLSARNSI 1011
>06_01_0793 - 5918912-5919793,5919830-5920285
Length = 445
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/85 (23%), Positives = 32/85 (37%)
Frame = +1
Query: 223 SKNRKERFQAISKYLVESSHNIVCLQEVWSEKDYLFLKETLKTVLPYSHYFYSGVLGSGL 402
S+ + F + + L C +V S K L K P++ + + +G
Sbjct: 37 SRGHRVSFVSTPRNLARLPDGTECTNDVPSGKFELLWKAFDALAAPFAEFLGAACDAAG- 95
Query: 403 CVFSKWVIQDVFFHQWPLNGYIHKI 477
W+I D F H PL HK+
Sbjct: 96 -ERPDWIIADTFHHWAPLVALQHKV 119
>09_02_0289 -
6941154-6941399,6941630-6941722,6941801-6941884,
6947011-6947146,6947310-6947455,6947826-6948051,
6948595-6948677,6949004-6949198,6949276-6949374,
6949762-6949875,6949949-6950036,6950353-6950558,
6950850-6950902,6951074-6951377,6952195-6952283,
6952675-6953052,6953665-6953726,6954124-6954189,
6955126-6955205
Length = 915
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 361 YSHYFYSGVLGSGLCVFS 414
Y+HYFY +G+GL + S
Sbjct: 693 YTHYFYEATVGAGLPIIS 710
>08_02_0294 -
15432424-15432669,15433007-15433099,15433168-15433251,
15434311-15434446,15434601-15434746,15435017-15435242,
15435885-15435967,15436867-15437061,15437148-15437246,
15438237-15438350,15438424-15438511,15438790-15438995,
15439306-15439358,15440473-15440776,15441278-15441366,
15441584-15441958,15442382-15442446,15442945-15442970,
15444007-15444225
Length = 948
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 361 YSHYFYSGVLGSGLCVFS 414
Y+HYFY +G+GL + S
Sbjct: 726 YTHYFYEATVGAGLPIIS 743
>07_03_0008 +
12303536-12303893,12303910-12304176,12304635-12304951,
12304975-12305819,12305859-12306069
Length = 665
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 170 ITEIDMFRVEHKYPNRLLKTRKWGQLLV*SVCNINTEM 57
I E+ ++H +++TR+W Q + + N+NT M
Sbjct: 625 ILELQTGSMQHTLEGHVVQTREWQQSVDAQLANLNTTM 662
>03_05_0829 +
28025760-28025846,28026366-28026473,28026721-28026752,
28026823-28026873,28027528-28027589,28027663-28027924,
28028634-28028899,28029138-28029232,28029772-28029948
Length = 379
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 352 VLPYSHYFYSGVLGSGLCVFSKWVIQDVFFHQWPLNGYIHKIH 480
VL Y + L SG+ +F+KWV+ +F ++P + IH
Sbjct: 8 VLTYLYLLIYVCLSSGVILFNKWVLSPKYF-KFPFPITLTMIH 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,372,787
Number of Sequences: 37544
Number of extensions: 239936
Number of successful extensions: 572
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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