Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N16
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930... 36 0.016
12_02_0406 - 18648414-18648809,18650049-18650180,18650959-186510... 30 1.1
04_04_0564 - 26261199-26261508,26261605-26261697,26262150-262622... 29 2.5
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 28 4.4
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 28 5.8
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 28 5.8
07_01_0031 + 251818-252867 28 5.8
>10_08_0459 +
18092656-18092724,18092827-18092886,18092970-18093038,
18093134-18093178,18093706-18094332,18094424-18094597,
18094688-18094991,18095070-18095161,18095253-18095319,
18095407-18095478,18095613-18095830,18095979-18096113,
18096225-18096520,18096603-18096774,18096860-18096958,
18097048-18097179,18097273-18097373,18097460-18097649,
18097713-18097751
Length = 986
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = -2
Query: 521 VIDISNNNNNDKELFNQIKKHILKFIFFLERISDVNKEVMNIYSYMH*IFVYMKLKMNYS 342
++D S+ ++ D EL + I+ IF E + DV KE++N S H + K+NY+
Sbjct: 14 IVDDSDESDCDGELSRRELDDIIYEIFRKEVVKDVKKEILNRKSCSH---AFRYAKVNYT 70
Query: 341 LDF 333
DF
Sbjct: 71 FDF 73
>12_02_0406 -
18648414-18648809,18650049-18650180,18650959-18651065,
18652979-18653183
Length = 279
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 312 KCSYSASDWSYSRGGICQ-PGPSLRGLPLAC 223
+C +SDW+Y R G C GP L G C
Sbjct: 150 QCDLGSSDWTYGRAGPCDLGGPRLVGQAAHC 180
>04_04_0564 -
26261199-26261508,26261605-26261697,26262150-26262295,
26262400-26262720,26263184-26263272,26263466-26263654,
26265546-26265804
Length = 468
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 227 ASGSPRRLGPGWQMPPRLYDQSEA 298
AS SPRR PG PRL+ + EA
Sbjct: 265 ASASPRRSSPGLVAAPRLFSKHEA 288
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = -2
Query: 317 STSVPIQLRTGHIVEVAFASRAPACAGSHWPVLRQS*DRKPAQVRSQHLRPKCKTRSDNS 138
S +V Q+R I VAF ++ W VL Q A+ L + K R N+
Sbjct: 177 SITVDRQMRRYEIPRVAFINKLDRMGADPWKVLNQI--VSGAETPDTQLMARSKLRHHNA 234
Query: 137 FIQLERN*IEKYEKWLNLSKPK 72
+Q+ E++E ++L + K
Sbjct: 235 AVQVPIGLEEEFEGLVDLVELK 256
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 228 PVGARAGWGPA-GKCHLDYMTSPKLNRNTCRLGHNNEI 338
P + GW P G+ HL+ M P L +LGH+ I
Sbjct: 627 PPAKKLGWDPKDGESHLNAMLRPMLLVALVQLGHDKTI 664
>08_01_0501 +
4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 530 IMRVIDISNNNNNDKELFNQIKKHILKFI 444
I+RV+D+S + DK L N K H LK++
Sbjct: 578 ILRVLDLSYSLLKDKHLKNIEKLHFLKYL 606
>07_01_0031 + 251818-252867
Length = 349
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 271 WHLPAGPQPARAPTGLSCGNR 209
WH+P G + R+ T SCG +
Sbjct: 160 WHVPLGRRDGRSSTAASCGGQ 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,420,024
Number of Sequences: 37544
Number of extensions: 243510
Number of successful extensions: 680
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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