Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N16
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000261-3|AAB52924.1|  464|Caenorhabditis elegans Hypothetical ...    29   1.7  
U55856-7|AAA98025.1|  249|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z78239-3|CAI79143.1|  309|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF125954-6|AAD14707.2|  346|Caenorhabditis elegans Serpentine re...    27   9.1  
AF016449-9|AAG23993.2|  351|Caenorhabditis elegans Serpentine re...    27   9.1  
AC006769-7|AAF60589.1|  346|Caenorhabditis elegans Serpentine re...    27   9.1  

>AF000261-3|AAB52924.1|  464|Caenorhabditis elegans Hypothetical
           protein F19B10.4 protein.
          Length = 464

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 185 RSQHLRPKCKTRSDNSFIQLERN*IEKYEKWLNLSKPKYHYSVMTFYISMKLY 27
           R    RP C   S     + ERN + K EK L+L +PK  +++    I   LY
Sbjct: 311 RKLEARPPCCCSSQKQSEESERNVLSKREKLLSL-EPKKSFNLYKLIIIFHLY 362


>U55856-7|AAA98025.1|  249|Caenorhabditis elegans Hypothetical
           protein F31E8.1 protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 554 FFFFFL*SIMRVIDISNNNNNDKELFNQIKKHILKFIFFLERISDVNKEVMNIY 393
           FF FFL SI   I  + ++N+   +F +   H+ ++    E    V  +++ IY
Sbjct: 165 FFIFFLFSISFFIFYATSSNSLSRVFWESSSHLKEWKAVEENYEGVGGDLLEIY 218


>Z78239-3|CAI79143.1|  309|Caenorhabditis elegans Hypothetical
           protein C30G7.5 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/68 (26%), Positives = 38/68 (55%)
 Frame = -2

Query: 464 KHILKFIFFLERISDVNKEVMNIYSYMH*IFVYMKLKMNYSLDFIIMT*STSVPIQLRTG 285
           KH L+ +F+L  + D    + +    ++ I  +  +++++   FI+++ S S+PIQL+  
Sbjct: 51  KH-LRLVFYLS-VGDFFNAIWSTPYIVYMIANWNPIRLDFDPLFILIS-SLSLPIQLKIS 107

Query: 284 HIVEVAFA 261
            IV +  A
Sbjct: 108 AIVTIGIA 115


>AF125954-6|AAD14707.2|  346|Caenorhabditis elegans Serpentine
           receptor, class t protein1 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 390 LYALNICVYEIKDELLFRFHYYDLIYKCSYSASDWSY 280
           L+ +N  +  I    L+ +  Y LI+K  YS S W Y
Sbjct: 200 LHNINNPIVAISTTFLYFYLCYYLIFKYGYSTSMWLY 236


>AF016449-9|AAG23993.2|  351|Caenorhabditis elegans Serpentine
           receptor, class t protein9 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 381 LNICVYEIKDELLFRFHYYDLIYKCSYSASDWSYSRGGICQ 259
           +N  +  I    L+ +  Y+L++K  YS S W Y    I Q
Sbjct: 201 INNIILVICSSTLYIYLSYNLLFKFGYSTSTWLYKTKLISQ 241


>AC006769-7|AAF60589.1|  346|Caenorhabditis elegans Serpentine
           receptor, class t protein2 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 390 LYALNICVYEIKDELLFRFHYYDLIYKCSYSASDWSY 280
           L+ +N  +  I    L+ +  Y LI+K  YS S W Y
Sbjct: 200 LHNINNPIVAISTTFLYFYLCYYLIFKYGYSTSMWLY 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,545,087
Number of Sequences: 27780
Number of extensions: 237394
Number of successful extensions: 647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)