Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N15
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    27   1.9  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   4.3  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   7.5  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   10.0 

>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 544 RQVPCA-TVCRRVHVSCATFNSG*KETVQSLTRVTSYTSRLLSLA 413
           R VP + T+ R  HVSCA  NSG   T     R  S+ SR L +A
Sbjct: 16  RTVPYSKTMVRSFHVSCAVKNSGNVPT----PRNKSFFSRALEMA 56


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 540 RCRARLCVAGCTCPVRHSTADRKKQ 466
           RCR  LC  G   P+  S+A   KQ
Sbjct: 466 RCRGGLCYNGVCVPIEGSSASWSKQ 490


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 4    LHEFGTRAHLEVMYRRHIGFTRHFVVHEMRVQRHRRILFLV 126
            +H+ G    +   Y R +    HF++ E R +   +ILFL+
Sbjct: 956  MHKDGHNVKVVERYLRTVFLRIHFLISEWRWEDVAQILFLI 996


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 299 IISYNYYFISNNSVPNIHLSRSLREARKRF 210
           ++S   YF+ NN   N+H+   L++ +++F
Sbjct: 499 LLSSFLYFLINNFNDNLHIIELLQKDKRKF 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,179
Number of Sequences: 5004
Number of extensions: 34991
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)