Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N13
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    73   2e-14
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    73   2e-14
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    28   0.60 
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    28   0.79 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   0.79 
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   1.4  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   4.2  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   5.6  
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...    25   7.3  
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...    25   7.3  
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...    25   7.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    24   9.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   9.7  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    24   9.7  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    24   9.7  

>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 34/45 (75%), Positives = 39/45 (86%)
 Frame = +2

Query: 323 AGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
           +GADYV+ES GVFTT + ASAHL GGAK+VIISA S DAPM+VVG
Sbjct: 90  SGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVVG 134



 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 25/38 (65%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
 Frame = +3

Query: 105 LVLR-ASIDKGADVVAINDPFIGLDYMVYLFQYDSTHG 215
           +VLR A + K   VVAINDPFI L+YM Y+F+YDSTHG
Sbjct: 17  IVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHG 54



 Score = 33.9 bits (74), Expect = 0.012
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 226 GTVEAVNGHLVVNGKNIAVFSERDPHAIPW 315
           G+VE  +G LV++G  I V +ERDP  I W
Sbjct: 58  GSVEIKDGKLVIDGNAIDVHNERDPADIKW 87



 Score = 29.1 bits (62), Expect = 0.34
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 68  KIGINGFGRIGR 103
           K+GINGFGRIGR
Sbjct: 5   KVGINGFGRIGR 16


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 72.9 bits (171), Expect = 2e-14
 Identities = 34/45 (75%), Positives = 39/45 (86%)
 Frame = +2

Query: 323 AGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
           +GA+YV+ES GVFTT + ASAHL GGAK+VIISA S DAPMFVVG
Sbjct: 90  SGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSKDAPMFVVG 134



 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 25/38 (65%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
 Frame = +3

Query: 105 LVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHG 215
           +VLR +I  G   VVA+NDPFI LDYM Y+F+YDSTHG
Sbjct: 17  IVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHG 54



 Score = 35.1 bits (77), Expect = 0.005
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 223 KGTVEAVNGHLVVNGKNIAVFSERDPHAIPW 315
           +G+VE   G LV++G +I V +ERDP  I W
Sbjct: 57  EGSVETKGGKLVIDGHSIDVHNERDPANIKW 87



 Score = 29.1 bits (62), Expect = 0.34
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 68  KIGINGFGRIGR 103
           K+GINGFGRIGR
Sbjct: 5   KVGINGFGRIGR 16


>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 181 WSTFSSMIRLTDCVKGTVEAVNGHLVVNGKNIAVFSE 291
           W++ SS  R+T+ +KG+V   N     +  ++A++S+
Sbjct: 175 WNSLSSRGRITNIIKGSVPLTNNSNGYDESSLAIYSK 211


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 27.9 bits (59), Expect = 0.79
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
 Frame = +2

Query: 188 PFPV*FDSRTVSKVP----------LRP*MDTSS*TERI*LCSLRGIPMLYHGGQAGADY 337
           PFP+ F  R  SKVP           +P   T+     I   ++R  P ++HG   GA+ 
Sbjct: 7   PFPLRFGKRFYSKVPPVTNHERILPKQPSFPTAPAQNEIATLTIRNGP-IFHGTSFGANR 65

Query: 338 VVESAGVFTTT 370
            V    VFTT+
Sbjct: 66  NVSGEAVFTTS 76


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.9 bits (59), Expect = 0.79
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 264 VYDEVSIYGLNGTFDTVRESNHTGKGRPCSQD 169
           V++  SI+G+ GTF+TV  ++  G  +  + D
Sbjct: 238 VHEVPSIHGMEGTFETVNLTSEAGNEKEFNND 269


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -3

Query: 301 GDPSQRTQLY--SFRLRRGVHLRPQRY 227
           G P++R  L+  +F +RRGVHL+  +Y
Sbjct: 163 GIPTKRKDLFPCNFFIRRGVHLKVNKY 189


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 344 QRRSQHQPDRHGIAWGSLSENTAIFFPFTTRCPFTASTVPL 222
           QR + HQ D +   + S+  N   + P +    F+ ST PL
Sbjct: 290 QRDNDHQKDLNFSPYKSIPLNNRPYSPMSEIVGFSGSTTPL 330


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 197  LEKVDHVVKTNERIIDSNNIGTLINRSTEHQADRCDQ 87
            L K+D V +TNER+  +++I +LI+     +   C Q
Sbjct: 1100 LAKLDIVKETNERLSTADSILSLIDTEALSRYYSCQQ 1136


>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAA 427
           G++  +YV+   G    T K    L  GAKKV+ S+A
Sbjct: 126 GRSSGNYVI-IVGHDVDTGKTRVKLPSGAKKVVPSSA 161


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAA 427
           G++  +YV+   G    T K    L  GAKKV+ S+A
Sbjct: 126 GRSSGNYVI-IVGHDVDTGKTRVKLPSGAKKVVPSSA 161


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAA 427
           G++  +YV+   G    T K    L  GAKKV+ S+A
Sbjct: 126 GRSSGNYVI-IVGHDVDTGKTRVKLPSGAKKVVPSSA 161


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 376 SFCSLGGWSQESNH 417
           ++C+L GWSQ S +
Sbjct: 901 TYCNLSGWSQSSRY 914


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 207 SNHTGKGRPCSQDQ*KDH**QQHRHPYQSKHGAPGRPMRPKPLIP 73
           S+     R   +++ KD   ++HR   +   G P +P RP+   P
Sbjct: 727 SHSKSHDREKEKEKKKDREHRKHRETEEEDEGPPPQPARPESTRP 771


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 138 DVVAINDPFIGLDYMVYLFQY 200
           D++ +  P++  DY V LF+Y
Sbjct: 677 DLLIVISPYLNQDYAVTLFEY 697


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 78  LTVLVASVGLVLRASIDKGADVVAINDPFIGL 173
           LT+ V S   VL  ++D G ++  ++D  +GL
Sbjct: 441 LTIEVESADKVLAKALDHGYNLRKVDDSHVGL 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,607
Number of Sequences: 5004
Number of extensions: 38463
Number of successful extensions: 136
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)