Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N13
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 83 1e-16
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 81 3e-16
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 76 2e-14
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 73 1e-13
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 61 5e-10
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 48 3e-06
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 44 6e-05
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279 28 3.1
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 28 4.2
01_01_0349 + 2776093-2776566,2778211-2778729,2778813-2779048,277... 27 7.3
09_04_0643 + 19176561-19176644,19176761-19176902,19178084-191781... 27 9.6
08_02_0734 - 20559249-20559868,20560812-20562132 27 9.6
04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029 27 9.6
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34... 27 9.6
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 82.6 bits (195), Expect = 1e-16
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = +2
Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
G GA+YVVES+GVFTTT+KASAHL GGAKKV+ISA SADAPMFVVG
Sbjct: 224 GNFGAEYVVESSGVFTTTEKASAHLKGGAKKVVISAPSADAPMFVVG 270
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVLRASIDKG-ADVVAINDPFIGLDYMVYLFQYDSTHG 215
LVLR + + +VVA+NDPFI YM Y+F+YDSTHG
Sbjct: 152 LVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHG 189
Score = 34.3 bits (75), Expect = 0.048
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 223 KGTVEAVNGH-LVVNGKNIAVFSERDPHAIPW 315
KG+++ V+ L +NGK + + S+RDP IPW
Sbjct: 192 KGSIKVVDDSTLEINGKKVTITSKRDPADIPW 223
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +2
Query: 65 SKIGINGFGRIGR 103
+K+GINGFGRIGR
Sbjct: 139 TKVGINGFGRIGR 151
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 81.4 bits (192), Expect = 3e-16
Identities = 38/47 (80%), Positives = 43/47 (91%)
Frame = +2
Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
G GA+YVVES+GVFTTT+KASAHL GGA+KV+ISA SADAPMFVVG
Sbjct: 165 GNFGAEYVVESSGVFTTTEKASAHLKGGARKVVISAPSADAPMFVVG 211
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/38 (57%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVLRASIDKG-ADVVAINDPFIGLDYMVYLFQYDSTHG 215
LVLR + ++ +VVA+NDPFI YM Y+F+YDSTHG
Sbjct: 93 LVLRIATNRDDIEVVAVNDPFIDAKYMAYMFKYDSTHG 130
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +1
Query: 223 KGTVEAVN-GHLVVNGKNIAVFSERDPHAIPW 315
KGT++ V+ L +NGK I+V S+RDP IPW
Sbjct: 133 KGTIKVVDESTLEINGKKISVTSKRDPSDIPW 164
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +2
Query: 65 SKIGINGFGRIGR 103
+K+GINGFGRIGR
Sbjct: 80 TKVGINGFGRIGR 92
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 75.8 bits (178), Expect = 2e-14
Identities = 35/47 (74%), Positives = 40/47 (85%)
Frame = +2
Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
G+ GA++VVES GVFT DKA+AHL GGAKKV+ISA S DAPMFVVG
Sbjct: 138 GETGAEFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVG 184
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 105 LVLRASIDKG-ADVVAINDPFIGLDYMVYLF 194
LV R ++ ++VA+NDPFI DYM+ F
Sbjct: 17 LVARVALQSDDVELVAVNDPFITTDYMICEF 47
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 68 KIGINGFGRIGR 103
KIGINGFGRIGR
Sbjct: 5 KIGINGFGRIGR 16
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 72.9 bits (171), Expect = 1e-13
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = +2
Query: 320 QAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
+AGA+YVVES GVFT +KA+AHL GGAKKV+ISA S DAPMFV G
Sbjct: 114 EAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCG 159
Score = 46.8 bits (106), Expect = 8e-06
Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVLRASID-KGADVVAINDPFIGLDYMVYLFQYDSTHG 215
LV R ++ + ++VA+NDPFI DYM Y+F+YD+ HG
Sbjct: 17 LVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHG 54
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 68 KIGINGFGRIGR 103
KIGINGFGRIGR
Sbjct: 5 KIGINGFGRIGR 16
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 60.9 bits (141), Expect = 5e-10
Identities = 36/59 (61%), Positives = 39/59 (66%), Gaps = 14/59 (23%)
Frame = +2
Query: 323 AGADYVVESAGVFTTTDKASAHL--------------VGGAKKVIISAASADAPMFVVG 457
AGA+YVVES GVFT DKA+AHL GGAKKV+ISA S DAPMFVVG
Sbjct: 97 AGAEYVVESTGVFTDKDKAAAHLKGQAVDLFSIIFHMQGGAKKVVISAPSKDAPMFVVG 155
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/38 (47%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVLRASID-KGADVVAINDPFIGLDYMVYLFQYDSTHG 215
LV R ++ + ++VA+NDPFI +YM Y+F+YD+ HG
Sbjct: 22 LVARVALQSEDVELVAVNDPFITTEYMTYMFKYDTVHG 59
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 253 LVVNGKNIAVFSERDPHAIPW 315
L+ K +AVF R+P IPW
Sbjct: 74 LIFGTKEVAVFGCRNPEEIPW 94
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISA-ASADAPMFVVG 457
G+ G D V+E GVF D A H+ GAKKV+I+A D P +VVG
Sbjct: 154 GELGIDLVIEGTGVFVDRDGAGKHIQAGAKKVLITAPGKGDIPTYVVG 201
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 68 KIGINGFGRIGR 103
K+ INGFGRIGR
Sbjct: 68 KVAINGFGRIGR 79
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 44.0 bits (99), Expect = 6e-05
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 299 PMLYHGGQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAAS--ADAPMFVVG 457
P+ + G D V+E GVF A H+ GAKKVII+A + AD P +V+G
Sbjct: 158 PLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVLG 212
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 223 KGTVEAVNGHLV-VNGKNIAVFSERDPHAIPW 315
K V+ V+ + V+GK I V S RDP +PW
Sbjct: 132 KADVKIVDDQTISVDGKLIKVVSNRDPLKLPW 163
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 68 KIGINGFGRIGR 103
K+ INGFGRIGR
Sbjct: 79 KVAINGFGRIGR 90
>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
Length = 1066
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 284 SLRGIP-MLYHGGQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVV 454
+LR P +H G + DY S+G +++ A + A K+ + AAS A + ++
Sbjct: 596 NLRKFPESSFHPGNSRLDYPASSSGSGSSSGSAGGRSLSAAAKIALIAASIVALVILI 653
>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 188 VDHVVKTNERIIDSNNIGTLINRSTEHQA 102
VD VV+ RI+D+ N +I+ T+H A
Sbjct: 991 VDCVVEVENRIVDNANFHRIISMFTDHSA 1019
>01_01_0349 +
2776093-2776566,2778211-2778729,2778813-2779048,
2779135-2779410,2779447-2779549,2780058-2780330
Length = 626
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/56 (39%), Positives = 25/56 (44%)
Frame = +2
Query: 281 CSLRGIPMLYHGGQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMF 448
CS G L GG A AD V +A S+ + GGA V AAS DA F
Sbjct: 92 CSEVGAAALRAGGHA-ADAAVAAALCLGVVHPMSSGVGGGAFIVTRDAASGDAVAF 146
>09_04_0643 +
19176561-19176644,19176761-19176902,19178084-19178172,
19178470-19179195
Length = 346
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 341 VESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVV 454
+++AGV D +A GG K V+++AAS + V
Sbjct: 147 LKAAGVRFDADADAAAAAGGPKNVLVTAASGGVGHYAV 184
>08_02_0734 - 20559249-20559868,20560812-20562132
Length = 646
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +2
Query: 269 RI*LCSLRGIPMLYHGGQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASA 433
RI L RG+ ++ GG + ++S+ V T + +A++ ++ A+A
Sbjct: 453 RIALAVARGVAFIHRGGPISSHGDIKSSNVVVTATRDAAYVTDYGLAQLVGGAAA 507
>04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029
Length = 677
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 302 WGSLSENTAIFFPFTTRCPFTASTVPL 222
W S +EN A+ + FT PFT +VP+
Sbjct: 151 WFSANEN-AMLYNFTNWLPFTVESVPV 176
>03_01_0038 -
340564-341108,341214-341463,341546-341649,341728-343255,
343995-344056,344578-344728
Length = 879
Score = 26.6 bits (56), Expect = 9.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +1
Query: 19 TLSDFVAKIYSYHNHVENRN 78
+L+DFV ++Y YH+ +N++
Sbjct: 166 SLADFVGELYGYHDDCKNKS 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,047,075
Number of Sequences: 37544
Number of extensions: 269365
Number of successful extensions: 658
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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