Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N13
(459 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X15254-2|CAA33327.1| 341|Caenorhabditis elegans gpd-3 gene prod... 81 3e-16
X15254-1|CAA33326.1| 341|Caenorhabditis elegans gpd-2 gene prod... 81 3e-16
U49941-6|AAB53874.1| 341|Caenorhabditis elegans Gpd (glyceralde... 81 3e-16
U49941-5|AAB53869.1| 341|Caenorhabditis elegans Gpd (glyceralde... 81 3e-16
Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical pr... 77 8e-15
Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical pr... 77 8e-15
X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein. 77 8e-15
X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein. 77 8e-15
X04818-1|CAA28504.1| 341|Caenorhabditis elegans glyceraldehyde-... 77 8e-15
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z81532-1|CAB04325.1| 162|Caenorhabditis elegans Hypothetical pr... 27 8.7
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 27 8.7
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ... 27 8.7
>X15254-2|CAA33327.1| 341|Caenorhabditis elegans gpd-3 gene product
protein.
Length = 341
Score = 81.4 bits (192), Expect = 3e-16
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = +2
Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
G +GADYVVES GVFTT +KA+AHL GGAKKVIISA SADAPMFVVG
Sbjct: 93 GASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVG 139
Score = 63.7 bits (148), Expect = 6e-11
Identities = 28/38 (73%), Positives = 35/38 (92%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHG 215
LVLRA+++K + +VVA+NDPFI +DYMVYLFQYDSTHG
Sbjct: 17 LVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHG 54
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 71 IGINGFGRIGR 103
+GINGFGRIGR
Sbjct: 6 VGINGFGRIGR 16
>X15254-1|CAA33326.1| 341|Caenorhabditis elegans gpd-2 gene product
protein.
Length = 341
Score = 81.4 bits (192), Expect = 3e-16
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = +2
Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
G +GADYVVES GVFTT +KA+AHL GGAKKVIISA SADAPMFVVG
Sbjct: 93 GASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVG 139
Score = 60.9 bits (141), Expect = 4e-10
Identities = 27/38 (71%), Positives = 34/38 (89%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHG 215
LVLRA+++K + +V A+NDPFI +DYMVYLFQYDSTHG
Sbjct: 17 LVLRAAVEKDSVNVDAVNDPFISIDYMVYLFQYDSTHG 54
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 71 IGINGFGRIGR 103
+GINGFGRIGR
Sbjct: 6 VGINGFGRIGR 16
>U49941-6|AAB53874.1| 341|Caenorhabditis elegans Gpd
(glyceraldehyde 3-phosphatedehydrogenase) protein 2
protein.
Length = 341
Score = 81.4 bits (192), Expect = 3e-16
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = +2
Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
G +GADYVVES GVFTT +KA+AHL GGAKKVIISA SADAPMFVVG
Sbjct: 93 GASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVG 139
Score = 63.7 bits (148), Expect = 6e-11
Identities = 28/38 (73%), Positives = 35/38 (92%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHG 215
LVLRA+++K + +VVA+NDPFI +DYMVYLFQYDSTHG
Sbjct: 17 LVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHG 54
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 71 IGINGFGRIGR 103
+GINGFGRIGR
Sbjct: 6 VGINGFGRIGR 16
>U49941-5|AAB53869.1| 341|Caenorhabditis elegans Gpd
(glyceraldehyde 3-phosphatedehydrogenase) protein 3
protein.
Length = 341
Score = 81.4 bits (192), Expect = 3e-16
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = +2
Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
G +GADYVVES GVFTT +KA+AHL GGAKKVIISA SADAPMFVVG
Sbjct: 93 GASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVG 139
Score = 63.7 bits (148), Expect = 6e-11
Identities = 28/38 (73%), Positives = 35/38 (92%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHG 215
LVLRA+++K + +VVA+NDPFI +DYMVYLFQYDSTHG
Sbjct: 17 LVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHG 54
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 71 IGINGFGRIGR 103
+GINGFGRIGR
Sbjct: 6 VGINGFGRIGR 16
>Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical
protein T09F3.3 protein.
Length = 341
Score = 76.6 bits (180), Expect = 8e-15
Identities = 37/47 (78%), Positives = 40/47 (85%)
Frame = +2
Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
G AD+VVES GVFTT +KASAHL GGAKKVIISA SADAPM+VVG
Sbjct: 93 GSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVG 139
Score = 60.5 bits (140), Expect = 6e-10
Identities = 27/38 (71%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHG 215
LVLRA+++K VVA+NDPFI +DYMVYLF+YDSTHG
Sbjct: 17 LVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHG 54
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 65 SKIGINGFGRIGR 103
+ +GINGFGRIGR
Sbjct: 4 ANVGINGFGRIGR 16
>Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical
protein F33H1.2 protein.
Length = 341
Score = 76.6 bits (180), Expect = 8e-15
Identities = 37/47 (78%), Positives = 40/47 (85%)
Frame = +2
Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
G AD+VVES GVFTT +KASAHL GGAKKVIISA SADAPM+VVG
Sbjct: 93 GSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVG 139
Score = 60.5 bits (140), Expect = 6e-10
Identities = 27/38 (71%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHG 215
LVLRA+++K VVA+NDPFI +DYMVYLF+YDSTHG
Sbjct: 17 LVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHG 54
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 65 SKIGINGFGRIGR 103
+ +GINGFGRIGR
Sbjct: 4 ANVGINGFGRIGR 16
>X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein.
Length = 341
Score = 76.6 bits (180), Expect = 8e-15
Identities = 37/47 (78%), Positives = 40/47 (85%)
Frame = +2
Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
G AD+VVES GVFTT +KASAHL GGAKKVIISA SADAPM+VVG
Sbjct: 93 GSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVG 139
Score = 60.5 bits (140), Expect = 6e-10
Identities = 27/38 (71%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHG 215
LVLRA+++K VVA+NDPFI +DYMVYLF+YDSTHG
Sbjct: 17 LVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHG 54
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 65 SKIGINGFGRIGR 103
+ +GINGFGRIGR
Sbjct: 4 ANVGINGFGRIGR 16
>X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein.
Length = 341
Score = 76.6 bits (180), Expect = 8e-15
Identities = 37/47 (78%), Positives = 40/47 (85%)
Frame = +2
Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
G AD+VVES GVFTT +KASAHL GGAKKVIISA SADAPM+VVG
Sbjct: 93 GSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVG 139
Score = 60.5 bits (140), Expect = 6e-10
Identities = 27/38 (71%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHG 215
LVLRA+++K VVA+NDPFI +DYMVYLF+YDSTHG
Sbjct: 17 LVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHG 54
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 65 SKIGINGFGRIGR 103
+ +GINGFGRIGR
Sbjct: 4 ANVGINGFGRIGR 16
>X04818-1|CAA28504.1| 341|Caenorhabditis elegans
glyceraldehyde-3-phosphate dehydrogenaseprotein.
Length = 341
Score = 76.6 bits (180), Expect = 8e-15
Identities = 37/47 (78%), Positives = 40/47 (85%)
Frame = +2
Query: 317 GQAGADYVVESAGVFTTTDKASAHLVGGAKKVIISAASADAPMFVVG 457
G AD+VVES GVFTT +KASAHL GGAKKVIISA SADAPM+VVG
Sbjct: 93 GSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVG 139
Score = 60.5 bits (140), Expect = 6e-10
Identities = 27/38 (71%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHG 215
LVLRA+++K VVA+NDPFI +DYMVYLF+YDSTHG
Sbjct: 17 LVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHG 54
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 65 SKIGINGFGRIGR 103
+ +GINGFGRIGR
Sbjct: 4 ANVGINGFGRIGR 16
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 147 QQHRHPYQSKHGAPGRPMRPKP 82
QQ +H Q + GAPG P P P
Sbjct: 791 QQQQHQQQQQQGAPGGPRPPYP 812
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 353 RLIQRRS-QHQPDRHGIAWGSLSENTA 276
RL +RS QH+ DRH I GSL E T+
Sbjct: 493 RLSMKRSGQHESDRHSI--GSLDETTS 517
>Z81532-1|CAB04325.1| 162|Caenorhabditis elegans Hypothetical
protein F36F2.1 protein.
Length = 162
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 190 FSSMIRLTDCVKGTVEAVNGHLVVNGKNIAVFSERDPHAI 309
F+ + ++D V GT+ H +++ + +F +RD H I
Sbjct: 99 FTIYVNISDKVVGTLLRARKHKMIDFEGEMLFQKRDDHVI 138
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 353 RLIQRRS-QHQPDRHGIAWGSLSENTA 276
RL +RS QH+ DRH I GSL E T+
Sbjct: 493 RLSMKRSGQHESDRHSI--GSLDETTS 517
>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
protein R10F2.1 protein.
Length = 2779
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2
Query: 161 RIIDSNNIGTLINRSTEHQAD 99
RI DSN+IGT I R E AD
Sbjct: 1240 RISDSNSIGTKIGRLGEKSAD 1260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,876,328
Number of Sequences: 27780
Number of extensions: 224696
Number of successful extensions: 698
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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