Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N12
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   4.3  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    24   9.8  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    24   9.8  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 77  MFIFEFVLF*ARRTCVPLNRE--YVYTVFATSLSV 175
           +F F  +LF ++   VPLN++  Y+YT     +SV
Sbjct: 147 IFFFLTILFLSKLNSVPLNKKISYLYTFLLAIVSV 181


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -3

Query: 247 SCSVMIAQAISVSSRLMFTV 188
           S SVMIAQAI  SS  M T+
Sbjct: 227 SYSVMIAQAILSSSECMMTL 246


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 389 HVGGEFYGHSEARSYG 342
           H GG+F GHS  R  G
Sbjct: 196 HFGGKFDGHSRGRGAG 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,288
Number of Sequences: 5004
Number of extensions: 29297
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)