Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N12
         (462 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein.    30   3.4  
DQ059482-1|AAY87153.1| 1995|Homo sapiens ciprofibrate bound prot...    30   3.4  
AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein.                30   3.4  
AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling fa...    30   3.4  

>DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein.
          Length = 2881

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = -2

Query: 362  SEARSYGNFSSSEQSQKAXXXXXXXXXXXVSRHGNTSQFVLGDDSSSYKREFTAHVHGIC 183
            S +RS  + SSS     A            S   ++S+    D+  + KRE T H+    
Sbjct: 2157 SHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYD 2216

Query: 182  PATLIETSRTPYKHTRDS 129
              ++   S T    T+DS
Sbjct: 2217 EESVASLS-TTQDETQDS 2233


>DQ059482-1|AAY87153.1| 1995|Homo sapiens ciprofibrate bound protein
            p240 isoform PRIC320-2 protein.
          Length = 1995

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = -2

Query: 362  SEARSYGNFSSSEQSQKAXXXXXXXXXXXVSRHGNTSQFVLGDDSSSYKREFTAHVHGIC 183
            S +RS  + SSS     A            S   ++S+    D+  + KRE T H+    
Sbjct: 1271 SHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYD 1330

Query: 182  PATLIETSRTPYKHTRDS 129
              ++   S T    T+DS
Sbjct: 1331 EESVASLS-TTQDETQDS 1347


>AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein.
          Length = 2881

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = -2

Query: 362  SEARSYGNFSSSEQSQKAXXXXXXXXXXXVSRHGNTSQFVLGDDSSSYKREFTAHVHGIC 183
            S +RS  + SSS     A            S   ++S+    D+  + KRE T H+    
Sbjct: 2157 SHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSFSSSSEESDSDEEEAQKRESTTHMKAYD 2216

Query: 182  PATLIETSRTPYKHTRDS 129
              ++   S T    T+DS
Sbjct: 2217 EESVASLS-TTQDETQDS 2233


>AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling factor
            CHROM1 protein.
          Length = 2897

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = -2

Query: 362  SEARSYGNFSSSEQSQKAXXXXXXXXXXXVSRHGNTSQFVLGDDSSSYKREFTAHVHGIC 183
            S +RS  + SSS     A            S   ++S+    D+  + KRE T H+    
Sbjct: 2157 SHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYD 2216

Query: 182  PATLIETSRTPYKHTRDS 129
              ++   S T    T+DS
Sbjct: 2217 EESVASLS-TTQDETQDS 2233


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,592,267
Number of Sequences: 237096
Number of extensions: 976602
Number of successful extensions: 1941
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1941
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)