Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N09
(414 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28943-4|AAA68358.1| 298|Caenorhabditis elegans Hypothetical pr... 142 9e-35
Z81532-3|CAC70088.2| 659|Caenorhabditis elegans Hypothetical pr... 32 0.19
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 30 0.76
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 30 0.76
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 30 0.76
AL132904-6|CAD91706.2| 326|Caenorhabditis elegans Hypothetical ... 29 1.0
AL132904-5|CAC35837.2| 406|Caenorhabditis elegans Hypothetical ... 29 1.0
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 29 1.3
AC006675-7|AAK84555.2| 409|Caenorhabditis elegans Hypothetical ... 29 1.8
U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast... 27 7.1
U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast... 27 7.1
Z70307-9|CAE54887.1| 246|Caenorhabditis elegans Hypothetical pr... 26 9.4
Z70307-8|CAA94333.2| 248|Caenorhabditis elegans Hypothetical pr... 26 9.4
>U28943-4|AAA68358.1| 298|Caenorhabditis elegans Hypothetical
protein E04F6.3 protein.
Length = 298
Score = 142 bits (344), Expect = 9e-35
Identities = 71/135 (52%), Positives = 87/135 (64%), Gaps = 2/135 (1%)
Frame = +2
Query: 11 EGSFTTRCYVVDILDKGSSAVAIVNSEVF-QNKQLICRTQQHIFVLGQGGFGGPRNSKNA 187
EG + VVDILDKGS A+ + N + +N + I Q F G G FGG R S +
Sbjct: 94 EGKLKSEARVVDILDKGSGALILGNVTTYDENGKKIAMQQFSTFQTGSGNFGGDRTSPHE 153
Query: 188 VPVQDAPKRAPDAVLEQQTAEDQAALYRM-SGDLNPLHIDPNVATASGHKKPILHGLASL 364
+ P RAPDAV+EQ+T DQAALYR+ SGD+NPLH+DP A SG K PILHGL SL
Sbjct: 154 IKAATVPDRAPDAVIEQKTTVDQAALYRLGSGDMNPLHVDPEFAKMSGFKTPILHGLCSL 213
Query: 365 GFSARHVLAQYGGND 409
GF+ RHV+A + GND
Sbjct: 214 GFATRHVIAAWAGND 228
>Z81532-3|CAC70088.2| 659|Caenorhabditis elegans Hypothetical
protein F36F2.6 protein.
Length = 659
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 59 GSSAVAIVN--SEVFQNKQLICRTQQHIFVLGQGGFGGPRNSKNAVPVQDAPKRAPDAVL 232
G + V I++ S+V+ + + + + + F G P+NSK +PVQ D VL
Sbjct: 255 GDNLVVIIDDRSDVWMYSEALIQIKPYRFFKEVGDINAPKNSKEQMPVQIEDDAHEDKVL 314
Query: 233 EQ 238
E+
Sbjct: 315 EE 316
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 29.9 bits (64), Expect = 0.76
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -3
Query: 220 GRTFRRVLYGNSVLTITRSTETPLPQNKYVLLCATNKL 107
G ++ V + N+V + TE+ L QNKY++L ++K+
Sbjct: 368 GHKWKEVRHDNTVTWLCSWTESVLGQNKYIMLNPSSKI 405
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 29.9 bits (64), Expect = 0.76
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -3
Query: 220 GRTFRRVLYGNSVLTITRSTETPLPQNKYVLLCATNKL 107
G ++ V + N+V + TE+ L QNKY++L ++K+
Sbjct: 440 GHKWKEVRHDNTVTWLCSWTESVLGQNKYIMLNPSSKI 477
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 29.9 bits (64), Expect = 0.76
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -3
Query: 220 GRTFRRVLYGNSVLTITRSTETPLPQNKYVLLCATNKL 107
G ++ V + N+V + TE+ L QNKY++L ++K+
Sbjct: 440 GHKWKEVRHDNTVTWLCSWTESVLGQNKYIMLNPSSKI 477
>AL132904-6|CAD91706.2| 326|Caenorhabditis elegans Hypothetical
protein Y111B2A.9b protein.
Length = 326
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -1
Query: 252 SSAVCCSSTASGARLGASCTGTAFLLLRGPPKPPCP 145
SS+ CS + AR ASC G GPP PP P
Sbjct: 235 SSSPMCSPQSVAARASASCDG-----CNGPPPPPQP 265
>AL132904-5|CAC35837.2| 406|Caenorhabditis elegans Hypothetical
protein Y111B2A.9a protein.
Length = 406
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -1
Query: 252 SSAVCCSSTASGARLGASCTGTAFLLLRGPPKPPCP 145
SS+ CS + AR ASC G GPP PP P
Sbjct: 315 SSSPMCSPQSVAARASASCDG-----CNGPPPPPQP 345
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -1
Query: 237 CSSTASGARLGASCTGTA-FLLLRGPPKPPCPRTNMC 130
C S+ G +G SC + PP PPCP C
Sbjct: 228 CGSSCGGCNMGCSCLPPPPSPVCMPPPPPPCPMPIPC 264
>AC006675-7|AAK84555.2| 409|Caenorhabditis elegans Hypothetical
protein M02H5.5 protein.
Length = 409
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = -1
Query: 303 SICSGLRS-PDIL*RAAWSSAVCCSSTASGARLGA-SCTGTAFLLLRGPPK---PPCPRT 139
++CS S PD++ + VC TA G GA +C A R PC ++
Sbjct: 3 ALCSSSSSFPDLIVAVSEKCPVCWKHTAHGMHFGAFTCRACAAFFRRFATTKNLKPCKKS 62
Query: 138 NMC 130
N+C
Sbjct: 63 NVC 65
>U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform b protein.
Length = 615
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 155 GFGGPRNSKNAVPVQDAPKRAPDAVLEQQTAEDQAALYRMSG 280
G GGP ++++ Q P + +QQ + L+ M G
Sbjct: 511 GLGGPSTNRSSTTQQAPPHMTQQSQQQQQQQQSSMGLFGMGG 552
>U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform a protein.
Length = 796
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 155 GFGGPRNSKNAVPVQDAPKRAPDAVLEQQTAEDQAALYRMSG 280
G GGP ++++ Q P + +QQ + L+ M G
Sbjct: 692 GLGGPSTNRSSTTQQAPPHMTQQSQQQQQQQQSSMGLFGMGG 733
>Z70307-9|CAE54887.1| 246|Caenorhabditis elegans Hypothetical
protein C39E9.8b protein.
Length = 246
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 126 CVRQISCLFWNTSLLTMATALDPLSSIST 40
C R +S LF + +TA DP+ SIST
Sbjct: 3 CSRSVSLLFTLLVGVYASTATDPIDSIST 31
>Z70307-8|CAA94333.2| 248|Caenorhabditis elegans Hypothetical
protein C39E9.8a protein.
Length = 248
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 126 CVRQISCLFWNTSLLTMATALDPLSSIST 40
C R +S LF + +TA DP+ SIST
Sbjct: 3 CSRSVSLLFTLLVGVYASTATDPIDSIST 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,478,532
Number of Sequences: 27780
Number of extensions: 263791
Number of successful extensions: 805
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -