Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N09
(414 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 35 4e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 35 4e-04
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 28 0.036
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 22 2.4
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 22 2.4
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 5.5
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 21 7.3
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 21 7.3
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 21 7.3
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 7.3
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 7.3
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 20 9.6
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.7 bits (76), Expect = 4e-04
Identities = 20/45 (44%), Positives = 22/45 (48%)
Frame = -1
Query: 264 RAAWSSAVCCSSTASGARLGASCTGTAFLLLRGPPKPPCPRTNMC 130
RAA + SS A GAR G SC L+ GPP PP P C
Sbjct: 412 RAASKEDLSPSSLADGARFGGSC------LIHGPPLPPLPLHTEC 450
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.7 bits (76), Expect = 4e-04
Identities = 20/45 (44%), Positives = 22/45 (48%)
Frame = -1
Query: 264 RAAWSSAVCCSSTASGARLGASCTGTAFLLLRGPPKPPCPRTNMC 130
RAA + SS A GAR G SC L+ GPP PP P C
Sbjct: 412 RAASKEDLSPSSLADGARFGGSC------LIHGPPLPPLPLHTEC 450
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 28.3 bits (60), Expect = 0.036
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 59 GSSAVAIVNSEVFQNKQLICRTQQHIFVL 145
G VAIV++ +++Q +CR + H F L
Sbjct: 718 GPRGVAIVSASTARSEQFLCRYEAHCFAL 746
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 231 SNNKPPRTRPLFTECPVILTH 293
S N+PPR FT ++L H
Sbjct: 329 SKNQPPRGAADFTAQVIVLNH 349
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 22.2 bits (45), Expect = 2.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 231 SNNKPPRTRPLFTECPVILTH 293
S N+PPR FT ++L H
Sbjct: 40 SKNQPPRGAADFTAQVIVLNH 60
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.0 bits (42), Expect = 5.5
Identities = 6/13 (46%), Positives = 7/13 (53%)
Frame = -1
Query: 165 PPKPPCPRTNMCC 127
PP+PP P C
Sbjct: 180 PPEPPVPTVTSAC 192
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 20.6 bits (41), Expect = 7.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +2
Query: 248 EDQAALYRMSGDLNPLHIDPNVATA 322
+D L+ GD P+H+ A A
Sbjct: 261 KDGQVLWEGFGDFQPVHVHKQTAIA 285
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 20.6 bits (41), Expect = 7.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +2
Query: 248 EDQAALYRMSGDLNPLHIDPNVATA 322
+D L+ GD P+H+ A A
Sbjct: 261 KDGQVLWEGFGDFQPVHVHKQTAIA 285
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 7.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 231 SNNKPPRTRPLFTECPVILTH 293
S N PP+ FT ++L H
Sbjct: 329 SKNNPPKGAADFTAQVIVLNH 349
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 20.6 bits (41), Expect = 7.3
Identities = 5/14 (35%), Positives = 10/14 (71%)
Frame = -2
Query: 158 NPPAPEQICAVVCD 117
+P PE +C++ C+
Sbjct: 579 HPEPPESVCSLPCE 592
Score = 20.6 bits (41), Expect = 7.3
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +1
Query: 58 GVQCCRHC 81
G QCC HC
Sbjct: 602 GEQCCWHC 609
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 20.6 bits (41), Expect = 7.3
Identities = 11/49 (22%), Positives = 21/49 (42%)
Frame = +2
Query: 161 GGPRNSKNAVPVQDAPKRAPDAVLEQQTAEDQAALYRMSGDLNPLHIDP 307
GG + ++ + AP++ +QQ + Q DL+ L+ P
Sbjct: 1432 GGQQEDRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHNLYAVP 1480
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 20.2 bits (40), Expect = 9.6
Identities = 12/47 (25%), Positives = 17/47 (36%)
Frame = -3
Query: 289 VKITGHSVKSXXXXXXXLFEHRIGRTFRRVLYGNSVLTITRSTETPL 149
+K H + + HRIGRT R G + + PL
Sbjct: 517 IKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPL 563
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,562
Number of Sequences: 438
Number of extensions: 3430
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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