Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N08
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0189 + 32214702-32215154                                         29   2.1  
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217...    29   2.8  
02_03_0382 + 18352508-18352841,18353817-18354028,18354190-183542...    29   3.7  
07_01_0130 - 963856-965454                                             28   5.0  
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260...    28   6.5  
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116...    27   8.7  
02_05_0841 + 32129863-32130294,32130395-32130459,32130565-321307...    27   8.7  

>03_06_0189 + 32214702-32215154
          Length = 150

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 204 AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 97
           AA + P  ALP +P   +  T LPP   I   P+AA
Sbjct: 30  AAAAAPPAALPVLPAVPALPTTLPPMPAIPAVPQAA 65


>02_04_0451 +
           23021139-23021269,23021366-23021498,23021594-23021789,
           23023376-23023737,23024049-23024363
          Length = 378

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -2

Query: 321 LHQLRTAMHHHP--PNQERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSF 148
           LH L T     P  P +  +   +ILP   PG  S + S    G TP G +   P  F F
Sbjct: 313 LHYLSTLSPPEPLAPPRTFSSENAILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFF 372


>02_03_0382 +
           18352508-18352841,18353817-18354028,18354190-18354277,
           18355017-18355474
          Length = 363

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/57 (26%), Positives = 20/57 (35%)
 Frame = -1

Query: 457 EDAGPSKKNFNTSPVSCVTEPRTPKXXXXXXXXXXXXXXXLTRQIAPPTKNGHAPPP 287
           E+ G +   F+  PVSCV E +  +                    A   K   APPP
Sbjct: 25  EEGGGATPTFDALPVSCVQEEKVKEEAAAEKGKEAAVAEEKEAAAAGEEKKEDAPPP 81


>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 318 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISR 220
           H +   +   PPN     NL +LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227


>02_01_0362 +
           2607097-2607371,2607766-2608612,2608842-2608910,
           2609968-2610202,2610454-2610536,2610924-2611046,
           2611326-2611379
          Length = 561

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 604 PQSPARRSFNGLPGPLGQGEHADSFSVARVRPRTS 500
           PQ P    F GLP  +G  +H D  ++A   P  S
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLS 311


>09_06_0076 + 20710482-20710670,20711313-20711547,20711664-20711689,
            20712000-20712293,20712603-20712728,20712827-20712896,
            20712992-20713182,20713394-20713519,20713878-20714279,
            20714364-20714758,20714861-20715315,20715403-20715524,
            20715653-20715693,20716026-20716129,20716363-20716576,
            20717667-20717780,20718576-20718612
          Length = 1046

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -1

Query: 223  PC*VKLSRRLHSWWCPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSNVGGSL 62
            PC   L R   S W   V++   Q C  + P  +   +P   PP   S VGG L
Sbjct: 936  PCKTSLPRESASAWWTQVDTVSGQGCGESSPLCRPPAYPPE-PPVVLSLVGGQL 988


>02_05_0841 +
           32129863-32130294,32130395-32130459,32130565-32130774,
           32130943-32131024
          Length = 262

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 237 PGEISRVESN*AAGSTPGGALPS-IPLSFSFAT--ILPPESKIFGFPEAARRA 88
           PGE+S +ES+ A G      LPS    S   AT   +PP ++I  F  AA  A
Sbjct: 176 PGEVSDLESDLAGGQKRSRPLPSAATASAQQATRPKIPPAAEIEAFFAAAEEA 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,613,073
Number of Sequences: 37544
Number of extensions: 467661
Number of successful extensions: 1218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)