Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N06
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 73 2e-13
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 65 3e-11
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 62 2e-10
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.024
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 29 2.1
08_02_0695 + 20122838-20122949,20123238-20123335,20123520-201236... 27 6.3
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 72.5 bits (170), Expect = 2e-13
Identities = 45/147 (30%), Positives = 63/147 (42%)
Frame = +2
Query: 56 MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIA 235
+ L +V + GL +L++YL RSY+SGY S+ D+ VF + PAAS +V RWY HI+
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81
Query: 236 SYTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXXXXXL 415
+ + T +EG
Sbjct: 82 ALLRSSGVT-AEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE 140
Query: 416 KAYADKKSKKPALIAKSSIILDVKPWD 496
+A A K S K KSS++LDVKPWD
Sbjct: 141 RAAAVKASGKKKESGKSSVLLDVKPWD 167
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 65.3 bits (152), Expect = 3e-11
Identities = 44/145 (30%), Positives = 60/145 (41%), Gaps = 2/145 (1%)
Frame = +2
Query: 68 DVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIASYTP 247
D+ TA GL L Q+L+ ++YVSG S+ DIKVF V P A P+ RWY +A+
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALA 66
Query: 248 AERKTWSEGVS--XXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXXXXXLKA 421
+ + GV+ + L G KA
Sbjct: 67 SRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAADERAASKA 126
Query: 422 YADKKSKKPALIAKSSIILDVKPWD 496
+ KK KSS++LDVKPWD
Sbjct: 127 SSKKKES-----GKSSVLLDVKPWD 146
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 62.1 bits (144), Expect = 2e-10
Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 8/151 (5%)
Frame = +2
Query: 68 DVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHI----- 232
+V + GL +L++YL RSY+SGY S D+ V+ P++S +V RW++HI
Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLR 66
Query: 233 ASYTPAER---KTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXX 403
S A+ K S V ++ LFG
Sbjct: 67 LSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE-- 124
Query: 404 XXXLKAYADKKSKKPALIAKSSIILDVKPWD 496
+A A K S K KSS++LDVKPWD
Sbjct: 125 ----RAAAVKASGKKKESGKSSVLLDVKPWD 151
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 35.5 bits (78), Expect = 0.024
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Frame = +2
Query: 89 LNELNQYLAERSYV--SGYTPSQADIKVFEQV-------GKVPAASLPHVLRWYSHI 232
L LNQ L+++S + +G+ PS ADI VF + G+ PHVLRW +I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 29.1 bits (62), Expect = 2.1
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +2
Query: 80 AQGLNELNQYLAERSYVSGYTPSQADIKVFEQV---GKVPAASL----PHVLRWYSHIAS 238
AQ L+ + +LA Y++G S AD + K P A L PHV W+ I+S
Sbjct: 145 AQVLDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS 204
Query: 239 YTPAERKT 262
PA +KT
Sbjct: 205 -RPAWKKT 211
>08_02_0695 +
20122838-20122949,20123238-20123335,20123520-20123696,
20123790-20123890,20124049-20124124,20124213-20124272,
20124362-20124546,20124638-20124734,20124817-20124903,
20124989-20125047,20125157-20125248,20125436-20125513,
20125617-20125777,20125880-20126098
Length = 533
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 104 QYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHV 211
QY E + V+GY P + F + VP AS P V
Sbjct: 441 QYFNEYTSVAGYGPVHTGARWFNDMINVPFASKPFV 476
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,673,722
Number of Sequences: 37544
Number of extensions: 193862
Number of successful extensions: 402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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