Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N05
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 137 5e-33
03_01_0547 + 4093196-4093657,4094267-4095148 137 5e-33
03_01_0544 + 4082528-4082989,4083585-4084466 137 5e-33
03_01_0543 + 4076981-4077442,4078145-4079026 137 5e-33
07_03_1080 + 23815232-23817040 29 1.9
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63... 29 1.9
10_08_1038 - 22485394-22485960,22486712-22487197 28 3.4
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 28 3.4
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 28 4.5
11_04_0242 - 15273774-15274043,15274131-15274235 27 5.9
04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888 27 5.9
11_03_0079 + 9669666-9669728,9670779-9672545 27 7.8
02_04_0462 + 23131433-23132836 27 7.8
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 137 bits (331), Expect = 5e-33
Identities = 65/145 (44%), Positives = 94/145 (64%)
Frame = +1
Query: 43 PWVELKLGILKPGTVVVFAPANIPY*SQVPWENAPRGSTRSCTR*QMLVSTSKTYLSRNL 222
P ++ G+LKPG VV F P+ + ++V + + + K ++L
Sbjct: 251 PVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDL 308
Query: 223 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 402
+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+D
Sbjct: 309 KRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKID 368
Query: 403 RRTGKSTEDNPKSIKSGDADIVNLV 477
RR+GK E PK +K+GDA +V ++
Sbjct: 369 RRSGKELEKEPKFLKNGDAGMVKMI 393
Score = 60.9 bits (141), Expect = 5e-10
Identities = 35/71 (49%), Positives = 41/71 (57%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGYPKAWYCCRFCPC*HSLLKSSSVGKCTTRLYKKLYPVTNV 185
+DVYKIGGIGTVPVGRVETG K F P L + ++ P NV
Sbjct: 239 QDVYKIGGIGTVPVGRVETGVLKPGMVVTFGP--SGLTTEVKSVEMHHEALQEALPGDNV 296
Query: 186 GFNVKNVSVKE 218
GFNVKNV+VK+
Sbjct: 297 GFNVKNVAVKD 307
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 137 bits (331), Expect = 5e-33
Identities = 65/145 (44%), Positives = 94/145 (64%)
Frame = +1
Query: 43 PWVELKLGILKPGTVVVFAPANIPY*SQVPWENAPRGSTRSCTR*QMLVSTSKTYLSRNL 222
P ++ G+LKPG VV F P+ + ++V + + + K ++L
Sbjct: 251 PVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDL 308
Query: 223 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 402
+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+D
Sbjct: 309 KRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKID 368
Query: 403 RRTGKSTEDNPKSIKSGDADIVNLV 477
RR+GK E PK +K+GDA +V ++
Sbjct: 369 RRSGKELEKEPKFLKNGDAGMVKMI 393
Score = 60.9 bits (141), Expect = 5e-10
Identities = 35/71 (49%), Positives = 41/71 (57%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGYPKAWYCCRFCPC*HSLLKSSSVGKCTTRLYKKLYPVTNV 185
+DVYKIGGIGTVPVGRVETG K F P L + ++ P NV
Sbjct: 239 QDVYKIGGIGTVPVGRVETGVLKPGMVVTFGP--SGLTTEVKSVEMHHEALQEALPGDNV 296
Query: 186 GFNVKNVSVKE 218
GFNVKNV+VK+
Sbjct: 297 GFNVKNVAVKD 307
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 137 bits (331), Expect = 5e-33
Identities = 65/145 (44%), Positives = 94/145 (64%)
Frame = +1
Query: 43 PWVELKLGILKPGTVVVFAPANIPY*SQVPWENAPRGSTRSCTR*QMLVSTSKTYLSRNL 222
P ++ G+LKPG VV F P+ + ++V + + + K ++L
Sbjct: 251 PVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDL 308
Query: 223 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 402
+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+D
Sbjct: 309 KRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKID 368
Query: 403 RRTGKSTEDNPKSIKSGDADIVNLV 477
RR+GK E PK +K+GDA +V ++
Sbjct: 369 RRSGKELEKEPKFLKNGDAGMVKMI 393
Score = 60.9 bits (141), Expect = 5e-10
Identities = 35/71 (49%), Positives = 41/71 (57%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGYPKAWYCCRFCPC*HSLLKSSSVGKCTTRLYKKLYPVTNV 185
+DVYKIGGIGTVPVGRVETG K F P L + ++ P NV
Sbjct: 239 QDVYKIGGIGTVPVGRVETGVLKPGMVVTFGP--SGLTTEVKSVEMHHEALQEALPGDNV 296
Query: 186 GFNVKNVSVKE 218
GFNVKNV+VK+
Sbjct: 297 GFNVKNVAVKD 307
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 137 bits (331), Expect = 5e-33
Identities = 65/145 (44%), Positives = 94/145 (64%)
Frame = +1
Query: 43 PWVELKLGILKPGTVVVFAPANIPY*SQVPWENAPRGSTRSCTR*QMLVSTSKTYLSRNL 222
P ++ G+LKPG VV F P+ + ++V + + + K ++L
Sbjct: 251 PVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDL 308
Query: 223 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 402
+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+D
Sbjct: 309 KRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKID 368
Query: 403 RRTGKSTEDNPKSIKSGDADIVNLV 477
RR+GK E PK +K+GDA +V ++
Sbjct: 369 RRSGKELEKEPKFLKNGDAGMVKMI 393
Score = 60.9 bits (141), Expect = 5e-10
Identities = 35/71 (49%), Positives = 41/71 (57%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGYPKAWYCCRFCPC*HSLLKSSSVGKCTTRLYKKLYPVTNV 185
+DVYKIGGIGTVPVGRVETG K F P L + ++ P NV
Sbjct: 239 QDVYKIGGIGTVPVGRVETGVLKPGMVVTFGP--SGLTTEVKSVEMHHEALQEALPGDNV 296
Query: 186 GFNVKNVSVKE 218
GFNVKNV+VK+
Sbjct: 297 GFNVKNVAVKD 307
>07_03_1080 + 23815232-23817040
Length = 602
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 118 SREC*QGQKRQQYQALGYPVSTLPTGTVPIPPILYTS 8
SR G + QQ Q P S+ PTGT P PP+ +S
Sbjct: 108 SRHFHHGARVQQQQP---PASSTPTGTAPTPPLSTSS 141
>06_01_0079 -
633595-633985,634346-634543,634864-635036,635355-635599,
635683-635860,636291-636473,636769-636873,637709-637846,
637933-638925
Length = 867
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 46 WVELKLGILKPGTVVVFAPANIPY*SQVPWENAP 147
W E+ +L PGT + APAN+ Y + ++ P
Sbjct: 12 WEEMVRRMLPPGTTIPEAPANLDYSIALEYDGPP 45
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 285 SASHCAKS--PRSNIKRIHTCIGLPHSPHSL 371
S+S CA + P NI RIH IGL SP L
Sbjct: 96 SSSSCAAAAPPSPNILRIHAPIGLARSPAHL 126
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -2
Query: 458 ASPDLMDLGLSSVDLPVRRSTFSL 387
A+ DLM G+S V+LPVRR+ F++
Sbjct: 580 ATLDLMYSGISMVNLPVRRNHFAV 603
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 380 PKSKRKSTVVLVNQQRTTLNPLNLVMP 460
P+ R+S + Q TT++P NLV+P
Sbjct: 103 PRRNRRSPALRAAFQETTISPANLVLP 129
>11_04_0242 - 15273774-15274043,15274131-15274235
Length = 124
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 379 QICRLCGLCGNPIQVCI 329
QIC +C CG P VCI
Sbjct: 74 QICAVCTCCGGPHGVCI 90
>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
Length = 748
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 223 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGY 333
RRG +++ PR +A + QV+ HP +S GY
Sbjct: 175 RRGSNCVENRRRKPRSSAQSSPQVVTPRHP--VSEGY 209
>11_03_0079 + 9669666-9669728,9670779-9672545
Length = 609
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 280 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 402
FTA+ +H Q++N VLDC AH+ CK+ + E ++
Sbjct: 572 FTAENRSKSH--QVNN-VLAVLDCLQAHMECKYDMLTESLE 609
>02_04_0462 + 23131433-23132836
Length = 467
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 9 DVYKIGGIGTVPVGRVETGYPK 74
DV+ I G GTV GR+E G K
Sbjct: 285 DVFSITGRGTVATGRIERGTVK 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,388,966
Number of Sequences: 37544
Number of extensions: 311617
Number of successful extensions: 844
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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