Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N05
(477 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 152 1e-37
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 152 1e-37
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 152 1e-37
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 32 0.24
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 30 0.99
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 30 0.99
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 3.0
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 3.0
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 3.0
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 27 7.0
U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical pr... 27 7.0
AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical ... 27 7.0
U49829-4|AAK68350.1| 427|Caenorhabditis elegans Dehydrogenases,... 27 9.2
AF125459-4|AAD12839.1| 287|Caenorhabditis elegans Hypothetical ... 27 9.2
AF125459-3|AAX88817.1| 277|Caenorhabditis elegans Hypothetical ... 27 9.2
AF125459-2|AAX88818.1| 414|Caenorhabditis elegans Hypothetical ... 27 9.2
AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical... 27 9.2
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 152 bits (368), Expect = 1e-37
Identities = 77/145 (53%), Positives = 94/145 (64%)
Frame = +1
Query: 43 PWVELKLGILKPGTVVVFAPANIPY*SQVPWENAPRGSTRSCTR*QMLVSTSKTYLSRNL 222
P ++ GI+KPG VV FAP N+ ++V S + K +++
Sbjct: 229 PVGRVETGIIKPGMVVTFAPQNVT--TEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDI 286
Query: 223 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 402
RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVD
Sbjct: 287 RRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVD 346
Query: 403 RRTGKSTEDNPKSIKSGDADIVNLV 477
RRTGK ED PK +KSGDA IV L+
Sbjct: 347 RRTGKKVEDFPKFLKSGDAGIVELI 371
Score = 64.9 bits (151), Expect = 3e-11
Identities = 38/94 (40%), Positives = 49/94 (52%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGYPKAWYCCRFCPC*HSLLKSSSVGKCTTRLYKKLYPVTNV 185
+DVYKIGGIGTVPVGRVETG K F P ++ + + P NV
Sbjct: 217 QDVYKIGGIGTVPVGRVETGIIKPGMVVTFAP--QNVTTEVKSVEMHHESLPEAVPGDNV 274
Query: 186 GFNVKNVSVKEFAPWLRCRRFEKQPTQGSCRLHS 287
GFNVKNVSVK+ C ++ P + + H+
Sbjct: 275 GFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHA 308
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 152 bits (368), Expect = 1e-37
Identities = 77/145 (53%), Positives = 94/145 (64%)
Frame = +1
Query: 43 PWVELKLGILKPGTVVVFAPANIPY*SQVPWENAPRGSTRSCTR*QMLVSTSKTYLSRNL 222
P ++ GI+KPG VV FAP N+ ++V S + K +++
Sbjct: 263 PVGRVETGIIKPGMVVTFAPQNVT--TEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDI 320
Query: 223 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 402
RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVD
Sbjct: 321 RRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVD 380
Query: 403 RRTGKSTEDNPKSIKSGDADIVNLV 477
RRTGK ED PK +KSGDA IV L+
Sbjct: 381 RRTGKKVEDFPKFLKSGDAGIVELI 405
Score = 64.9 bits (151), Expect = 3e-11
Identities = 38/94 (40%), Positives = 49/94 (52%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGYPKAWYCCRFCPC*HSLLKSSSVGKCTTRLYKKLYPVTNV 185
+DVYKIGGIGTVPVGRVETG K F P ++ + + P NV
Sbjct: 251 QDVYKIGGIGTVPVGRVETGIIKPGMVVTFAP--QNVTTEVKSVEMHHESLPEAVPGDNV 308
Query: 186 GFNVKNVSVKEFAPWLRCRRFEKQPTQGSCRLHS 287
GFNVKNVSVK+ C ++ P + + H+
Sbjct: 309 GFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHA 342
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 152 bits (368), Expect = 1e-37
Identities = 77/145 (53%), Positives = 94/145 (64%)
Frame = +1
Query: 43 PWVELKLGILKPGTVVVFAPANIPY*SQVPWENAPRGSTRSCTR*QMLVSTSKTYLSRNL 222
P ++ GI+KPG VV FAP N+ ++V S + K +++
Sbjct: 263 PVGRVETGIIKPGMVVTFAPQNVT--TEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDI 320
Query: 223 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 402
RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVD
Sbjct: 321 RRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVD 380
Query: 403 RRTGKSTEDNPKSIKSGDADIVNLV 477
RRTGK ED PK +KSGDA IV L+
Sbjct: 381 RRTGKKVEDFPKFLKSGDAGIVELI 405
Score = 64.9 bits (151), Expect = 3e-11
Identities = 38/94 (40%), Positives = 49/94 (52%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGYPKAWYCCRFCPC*HSLLKSSSVGKCTTRLYKKLYPVTNV 185
+DVYKIGGIGTVPVGRVETG K F P ++ + + P NV
Sbjct: 251 QDVYKIGGIGTVPVGRVETGIIKPGMVVTFAP--QNVTTEVKSVEMHHESLPEAVPGDNV 308
Query: 186 GFNVKNVSVKEFAPWLRCRRFEKQPTQGSCRLHS 287
GFNVKNVSVK+ C ++ P + + H+
Sbjct: 309 GFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHA 342
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 31.9 bits (69), Expect = 0.24
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +1
Query: 280 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 459
F A+V+VL H I++GY+ VL +A + +D++TG+ + K +K +
Sbjct: 431 FDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGE--KKRAKFVKQDEK 488
Query: 460 DIVNL 474
I+ L
Sbjct: 489 CIMRL 493
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 29.9 bits (64), Expect = 0.99
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 345 GLPHSPHSLQICRNQRESRPSYW*INR 425
GL HSPHS N R S P ++ INR
Sbjct: 47 GLVHSPHSSFTTENLRSSDPMFFDINR 73
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 29.9 bits (64), Expect = 0.99
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +3
Query: 39 VPVGRVETGYPKAWYCCRFCPC---*HSLLKSSSVG 137
VP + P W CCRFCP +LL+ S++G
Sbjct: 862 VPKDHPNSSGPPQWECCRFCPLRSYPDNLLQYSNIG 897
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 343 LDCHTAHIACKFAEIKEKVDRRTGKSTE 426
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 343 LDCHTAHIACKFAEIKEKVDRRTGKSTE 426
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 343 LDCHTAHIACKFAEIKEKVDRRTGKSTE 426
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +1
Query: 373 KFAEIKEKVDRRTGKSTEDNPKSIKSGDADI 465
K +E KEK DR+ GK TED P G ADI
Sbjct: 138 KVSEQKEK-DRKEGKDTED-PSKKGLGRADI 166
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 250 KNNPPRGAAD-FTAQVIVLNHP 312
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 250 KNNPPRGAAD-FTAQVIVLNHP 312
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical
protein F47C10.4 protein.
Length = 357
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 260 HPGELQTSQRKSLC*ITQVKYQTDTHLYWI 349
H G + ++ SLC +T Y+ +LYWI
Sbjct: 311 HNGSSRFTELLSLCTVTNKYYEDVQYLYWI 340
>AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical
protein Y55F3AM.9 protein.
Length = 379
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 379 AEIKEKVDRRTGKSTEDNPKS 441
AEI + +D+ GKSTE++P++
Sbjct: 27 AEILQSLDKSLGKSTEESPEA 47
>U49829-4|AAK68350.1| 427|Caenorhabditis elegans Dehydrogenases,
short chain protein29 protein.
Length = 427
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 9 DVYKIGGIGTVPVGRVETGYPKAWYC 86
DV K GG+ TV E K WYC
Sbjct: 72 DVNKEGGLETVKTIAAEGNMAKFWYC 97
>AF125459-4|AAD12839.1| 287|Caenorhabditis elegans Hypothetical
protein Y25C1A.7b protein.
Length = 287
Score = 26.6 bits (56), Expect = 9.2
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Frame = -2
Query: 287 AVKSAAPLGGLFFESPAT*PRRK---FLDRY---VFDVETN 183
A SAAP GG+F +S +T RK F Y FDVET+
Sbjct: 48 ATSSAAPSGGVFDDSQSTTSTRKGNFFSFEYYQQFFDVETD 88
>AF125459-3|AAX88817.1| 277|Caenorhabditis elegans Hypothetical
protein Y25C1A.7a protein.
Length = 277
Score = 26.6 bits (56), Expect = 9.2
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Frame = -2
Query: 287 AVKSAAPLGGLFFESPAT*PRRK---FLDRY---VFDVETN 183
A SAAP GG+F +S +T RK F Y FDVET+
Sbjct: 38 ATSSAAPSGGVFDDSQSTTSTRKGNFFSFEYYQQFFDVETD 78
>AF125459-2|AAX88818.1| 414|Caenorhabditis elegans Hypothetical
protein Y25C1A.7c protein.
Length = 414
Score = 26.6 bits (56), Expect = 9.2
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Frame = -2
Query: 287 AVKSAAPLGGLFFESPAT*PRRK---FLDRY---VFDVETN 183
A SAAP GG+F +S +T RK F Y FDVET+
Sbjct: 38 ATSSAAPSGGVFDDSQSTTSTRKGNFFSFEYYQQFFDVETD 78
>AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical
protein Y110A2AL.1 protein.
Length = 142
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 223 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQI 321
RR Y D P+GA DF AQ++ PG I
Sbjct: 64 RRHYF--DLHGMTPQGAVDFVAQIVEGRRPGYI 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,302,261
Number of Sequences: 27780
Number of extensions: 277954
Number of successful extensions: 762
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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