Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N04
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    29   0.71 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.9  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    26   3.8  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   3.8  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   5.0  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    26   5.0  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   5.0  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   8.8  

>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 550 SPSSASGTFLGAITVSTPSEDSRDSTVSGVQP 455
           +PS ASGT  G I V    EDS D+++  ++P
Sbjct: 300 TPSFASGTENGVINVWRLDEDSNDNSMGIIKP 331


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 224  RFLPSGR*MHSANLQE*WPIRNADLEDDEDARSRNQKGTVAATFLNF 84
            + +P    +H+A  Q  WP+RN+  E +E     N   +V + ++ F
Sbjct: 1295 KIIPVALSLHNAEFQGLWPLRNSS-EKEEVCSVFNISKSVCSKYVQF 1340


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 32  LRESAISKAFYEIV--FID*NLKMSLLPFLFDYEIERP 139
           L +S I   + E++  F D NLK  LL  ++ Y  ERP
Sbjct: 5   LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERP 42


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 616 SPLAWSFNSLRTGPVCAMGTFRSPSSASGTFLGAITVSTPSEDSRDSTVSGVQP 455
           +P+++SF SLR G      +  + SS S +   + ++S+ SE   DS  S   P
Sbjct: 59  TPISYSFRSLRRGHTSGHASEHTSSSRS-SHDESDSMSSSSESDSDSVSSESNP 111


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 74  FID*NLKMSLLPFLFDYEIERPRRLLDQHFGLAITPEDLL 193
           F D  LK  LL  +F+   ERP  + ++   +A++  D+L
Sbjct: 46  FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDIL 85


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 541 SASGTFLGAITVSTPSEDSRDSTVS 467
           S+SGTFL  + +S PS+ S+   +S
Sbjct: 105 SSSGTFLNHVRLSPPSKTSKPYPIS 129


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
 Frame = +3

Query: 225  NTTARGVISPPPPDVGSCIKADKDKFQVNLDVQHFTPEEISVKTADGYIVVEGKHEE--- 395
            N  ++    PPPP         KD +    D    +P E+++K  +   +V+ +      
Sbjct: 1086 NNVSKPSAVPPPPPPPPAEVEKKDLYLALYDFAGRSPNEMTIKKDEIIEIVQKEPSGWWL 1145

Query: 396  --KKDQHGYISRQFTRRYALPEGCTPETVES 482
              K    G++   +   Y   +G TP+T  S
Sbjct: 1146 ALKNGAEGWVPATYVTEY---KGSTPQTTAS 1173


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 201 LSARW*KTNTTARGVISPPPPDVGSCIKADKDKFQVNLDVQHFTPEEISVKT 356
           LSA+  +T +T  G   P PP V +C   D D     L +  F P E+   +
Sbjct: 319 LSAQDKETTSTKPG---PVPPLVLTCCVGDYDLIVEELILAGFNPNEVDASS 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,162
Number of Sequences: 5004
Number of extensions: 46488
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)