Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N04
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 46 2e-05
03_02_0484 + 8805053-8805538 46 3e-05
03_02_0483 - 8804021-8804485 46 3e-05
03_02_0478 + 8775892-8776377 44 1e-04
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 38 0.006
01_01_0229 - 1943473-1943922 38 0.008
01_01_0231 + 1951047-1951499 37 0.011
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 36 0.034
01_01_0227 + 1933247-1933699 35 0.045
06_01_1017 - 7951985-7952425 32 0.42
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422... 31 0.73
02_02_0077 - 6586638-6587165 31 0.73
05_01_0299 - 2322204-2322734,2324089-2326164 29 2.2
10_07_0141 + 13347648-13348331 29 3.0
12_02_0793 - 23200915-23202931,23203136-23203959 28 5.2
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 28 5.2
11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115... 28 6.8
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 28 6.8
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 28 6.8
10_02_0201 - 6764313-6765263 28 6.8
02_05_0081 + 25671014-25671200,25672490-25672796,25673508-256736... 28 6.8
04_04_0595 + 26490989-26491184,26492375-26492681,26493226-264933... 27 9.0
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959 27 9.0
>03_02_0485 - 8808139-8808618
Length = 159
Score = 46.0 bits (104), Expect = 2e-05
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Frame = +3
Query: 315 DVQHFTPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 470
DV EE+ V+ DG I+ + G+ EEK D+ + R +F RR+ LPE PE
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 471 TVESRLSSDGVLTVIAPRKVPE 536
+++ + +GVLTV P++ P+
Sbjct: 128 QIKASM-ENGVLTVTVPKEEPK 148
>03_02_0484 + 8805053-8805538
Length = 161
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Frame = +3
Query: 315 DVQHFTPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 470
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE PE
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 471 TVESRLSSDGVLTVIAPRKVPE 536
+++ + +GVLTV P++ P+
Sbjct: 130 QIKASM-ENGVLTVTVPKEEPK 150
>03_02_0483 - 8804021-8804485
Length = 154
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Frame = +3
Query: 315 DVQHFTPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 470
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE PE
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 471 TVESRLSSDGVLTVIAPRKVPE 536
+++ + +GVLTV P++ P+
Sbjct: 123 QIKASM-ENGVLTVTVPKEEPK 143
>03_02_0478 + 8775892-8776377
Length = 161
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Frame = +3
Query: 315 DVQHFTPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 470
DV EE+ V+ DG I+ + G+ EEK DQ + R +F RR+ LP+ PE
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 471 TVESRLSSDGVLTVIAPRK 527
+++ + +GVLTV P++
Sbjct: 130 QIKASM-ENGVLTVTVPKE 147
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 315 DVQHFTPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 470
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 471 TVESRLSSDGVLTVIAPR 524
V++ L +GVLTV P+
Sbjct: 119 QVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 315 DVQHFTPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 470
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 471 TVESRLSSDGVLTVIAPR 524
V++ + +GVLTV P+
Sbjct: 118 QVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 37.1 bits (82), Expect = 0.011
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 315 DVQHFTPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 470
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 471 TVESRLSSDGVLTVIAPR 524
V++ + +GVLTV P+
Sbjct: 119 QVKAGM-ENGVLTVTVPK 135
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 35.5 bits (78), Expect = 0.034
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Frame = +3
Query: 279 IKADKDKFQVNLDVQHFTPEEISVKTADGYIVVEGKHEEKKDQ------HGYISRQ---- 428
+ D + ++ D+ + EE+ V D +V+ G+H++++ + G+ +
Sbjct: 137 VMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSS 196
Query: 429 FTRRYALPEGCTPETVESRLSSDGVLTVIAPRKVPEALEGERKVPIAQTGPVRKELKDHA 608
+ R ALP+ C V + L +GVL V P+ E ERKV Q ++K + ++
Sbjct: 197 YDMRLALPDECDKSKVRAEL-KNGVLLVTVPK-----TEVERKVIDVQIKYLKKLVMENC 250
Query: 609 NGD 617
+ +
Sbjct: 251 SDE 253
>01_01_0227 + 1933247-1933699
Length = 150
Score = 35.1 bits (77), Expect = 0.045
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 375 VEGKHEEKKDQHGYISRQFTRRYALPEGCTPETVESRLSSDGVLTVIAPRK 527
V+GK++E+ S +F RR+ LP G + V + + +GVLTV P++
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>06_01_1017 - 7951985-7952425
Length = 146
Score = 31.9 bits (69), Expect = 0.42
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +3
Query: 342 ISVKTADGYIVVEGKHEEKKDQHGYISR----QFTRRYALPEGCTPETVESRLSSDGVLT 509
++V+ A + E + E +KD +++ +F R ALP E + + + + GVLT
Sbjct: 65 LTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDN-GVLT 123
Query: 510 VIAPRKVPEALEGERKVPIA 569
V+ P++ A R + ++
Sbjct: 124 VVVPKEPAPARPRTRPIAVS 143
>12_02_0849 -
23640091-23640279,23640537-23640677,23640756-23642203,
23642300-23642372,23642452-23642572,23642689-23642791,
23642979-23643052,23643140-23643285,23643368-23643476,
23643580-23643704,23643989-23644342,23644440-23644503,
23644581-23645032
Length = 1132
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -3
Query: 550 SPSSASGTFLGAITVSTPSEDSRDSTVSG 464
S S+ +G+ LG +TVSTP DS +S +G
Sbjct: 819 SASTDNGSLLGEVTVSTPKPDSIESIPTG 847
>02_02_0077 - 6586638-6587165
Length = 175
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 426 QFTRRYALPEGCTPETVESRLSSDGVLTVIAPRKVPEALEGERKVPIAQTG 578
+F RR+ LPE + V + DGVLTV +K P + R V + G
Sbjct: 117 KFMRRFPLPESADLDGVRAEYK-DGVLTVTVDKKPPPEPKKPRVVEVKVAG 166
>05_01_0299 - 2322204-2322734,2324089-2326164
Length = 868
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 219 KTNTTARGVISPPPPDVGSCIKADKDKFQVNLDVQHFTP 335
+T T RG ++P PP+ + KAD NL+V P
Sbjct: 272 QTGVTFRGKLTPVPPNSYNTAKADSSATPANLNVPSSKP 310
>10_07_0141 + 13347648-13348331
Length = 227
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 411 GYISRQFTRRYALPEGCTPETVESRLSSD-GVLTVIAPRKVPEAL 542
G+I+ +F RRY + + TPE E+ L+ D +L ++ P AL
Sbjct: 31 GFITNKFGRRYGVGDHGTPE--EAALAHDRAILAILGAHASPAAL 73
>12_02_0793 - 23200915-23202931,23203136-23203959
Length = 946
Score = 28.3 bits (60), Expect = 5.2
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Frame = +3
Query: 357 ADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTPE-TVESRLSSDGVLTVIAPRKVP 533
A+G+I EG H+ ++ Y + R LP + ++ D +L +I V
Sbjct: 453 AEGFIPTEGVHDMEEVGECYFNDLINRSMILPVNIQYDGRADACRVHDMILDLIISISVK 512
Query: 534 E---ALEGERKVPIAQTGPVRK-ELKDHANGD 617
E L G++ I Q VR+ L HA D
Sbjct: 513 ENFVTLHGDQNYKIVQQNKVRRLSLNYHARED 544
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -3
Query: 376 TTMYPSAVFTDISSGVKCCTSKFTWNLSLSALIQEP--TSGGGGEMTPR 236
T P+AV +GV T+++S S + P SGGGG TP+
Sbjct: 54 TAAIPAAVAATTRAGVPAAPPHPTYSISCSTPPRPPLNLSGGGGARTPQ 102
>11_06_0738 - 26807046-26807129,26807720-26807957,26809374-26811509,
26812145-26813253
Length = 1188
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/52 (23%), Positives = 31/52 (59%)
Frame = +3
Query: 276 CIKADKDKFQVNLDVQHFTPEEISVKTADGYIVVEGKHEEKKDQHGYISRQF 431
C+ +++ + + +HF E++S K+A V++ +H+E + H ++ R++
Sbjct: 1038 CVGTREEECRTPMKQEHFVKEDLSEKSA----VLQNEHDE--EAHKFVDRRY 1083
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 214 GKKRILPPVASSRRHRQTSVPVSKQTKTSS 303
GKK LPP A++ + P+ K+ KTSS
Sbjct: 586 GKKLELPPRANTSTLGSSETPMEKENKTSS 615
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 435 RRYALPEGCTPETVESRLSSDGVLTV-IAPR 524
RR ALP G PE ESR S V + I+PR
Sbjct: 105 RRKALPNGSDPENEESRSSKMAVRSANISPR 135
>10_02_0201 - 6764313-6765263
Length = 316
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 326 MLHV*IHLELVFVCFDTGTDVWRWRR 249
+LH ++L+ V + + TGTD RW R
Sbjct: 160 ILHASLYLDAVVLPYYTGTDALRWSR 185
>02_05_0081 +
25671014-25671200,25672490-25672796,25673508-25673637,
25677283-25677477
Length = 272
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 361 SAVFTDISSGVKCCTSKFTWNLSLSALIQEPTSGGGGEMTPRAVVFVFYHR 209
+ + TD G C + ++LS +A + +G GG++ R + V Y R
Sbjct: 115 TVIVTDECPGGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRR 165
>04_04_0595 +
26490989-26491184,26492375-26492681,26493226-26493355,
26493878-26493940,26494702-26494905
Length = 299
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 361 SAVFTDISSGVKCCTSKFTWNLSLSALIQEPTSGGGGEMTPRAVVFVFYHR 209
+ + TD G C + ++LS +A + +G GG + R + V Y R
Sbjct: 118 TVIVTDECPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRR 168
>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
Length = 849
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 266 VWRWRRDDATGGSIRFLP 213
+W W DD TGG IR P
Sbjct: 373 LWDWELDDRTGGCIRDTP 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,079,766
Number of Sequences: 37544
Number of extensions: 365432
Number of successful extensions: 1252
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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