Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N03
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 31 0.41
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 31 0.72
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 28 3.8
09_02_0196 - 5678744-5679222,5679304-5679937 28 3.8
11_04_0299 + 16127671-16128180,16128217-16128516 28 5.1
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 28 5.1
02_02_0483 - 10830978-10831284,10831727-10832232,10832770-10832856 27 6.7
12_02_0541 + 20162313-20162374,20162670-20163419,20164627-201648... 27 8.8
11_03_0191 - 11366831-11367676 27 8.8
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 27 8.8
01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266 27 8.8
01_05_0169 + 18874799-18875057,18875103-18875338 27 8.8
>01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 31.5 bits (68), Expect = 0.41
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +1
Query: 193 SVISIKFTFKL--SCLFFNYAKSSIEMQFFFLQNVMYVHFMQFFLKCFCFEGHNLLILTS 366
S+++++F + L S ++ S ++ ++ + Y+ FM F L F F G +T
Sbjct: 1258 SLVTVEFPYILVQSLIYGTIFYSLGSFEWTAVKFLWYLFFMYFTLLYFTFYGMMTTAITP 1317
Query: 367 YNTYCDSP*DVSYYLWLLMFNFVAKHRRVP 456
+T Y LW L F+ +R+P
Sbjct: 1318 NHTVAPIIAAPFYTLWNLFCGFMIPRKRIP 1347
>01_05_0660 - 24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 30.7 bits (66), Expect = 0.72
Identities = 23/88 (26%), Positives = 35/88 (39%)
Frame = +1
Query: 196 VISIKFTFKLSCLFFNYAKSSIEMQFFFLQNVMYVHFMQFFLKCFCFEGHNLLILTSYNT 375
VI I +T + ++ + I ++ + Y+ FM F L F F G + LT
Sbjct: 1289 VIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYH 1348
Query: 376 YCDSP*DVSYYLWLLMFNFVAKHRRVPV 459
Y +W L FV RVP+
Sbjct: 1349 IASIVSSAFYAIWNLFSGFVIPRPRVPI 1376
>09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 28.3 bits (60), Expect = 3.8
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 295 YVHFMQFFLKCFCFEGHNLLILT-SYNTYCDSP*DVSYY-LWLLMFNFVAKHRRVPV 459
Y+ FM F L + F G + LT SYN S ++Y +W L F+ R+P+
Sbjct: 1206 YLFFMYFTLSYYTFYGMMSVGLTPSYNVA--SVVSTAFYAIWNLFSGFIIPRTRIPI 1260
>09_02_0196 - 5678744-5679222,5679304-5679937
Length = 370
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 261 RDAIFFFTKCYVCTFHAILSEV 326
RD FF T+ Y FHA+L EV
Sbjct: 214 RDRYFFLTRPYPPAFHALLGEV 235
>11_04_0299 + 16127671-16128180,16128217-16128516
Length = 269
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 261 RDAIFFFTKCYVCTFHAILSEV 326
RD FF T Y FHA+L EV
Sbjct: 125 RDRYFFLTPSYPPAFHALLGEV 146
>10_01_0307 +
3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 170 AELKGAWIVL*V*NLHLSYLVCFLIMRNPVSRCNFFFYKMLC 295
AEL +W+ + ++L + + FL + +SRCN + MLC
Sbjct: 216 AELTISWLEETLIEINLIFDILFLFFYDNLSRCNGGLWIMLC 257
>02_02_0483 - 10830978-10831284,10831727-10832232,10832770-10832856
Length = 299
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 261 RDAIFFFTKCYVCTFHAILSE 323
RD FF T Y TFHA+L E
Sbjct: 62 RDRYFFLTPPYPPTFHALLGE 82
>12_02_0541 +
20162313-20162374,20162670-20163419,20164627-20164820,
20165001-20165074,20165094-20165114
Length = 366
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 261 RDAIFFFTKCYVCTFHAILSEV 326
RD FF T Y FHA+L EV
Sbjct: 135 RDRYFFLTPPYPPAFHALLGEV 156
>11_03_0191 - 11366831-11367676
Length = 281
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 261 RDAIFFFTKCYVCTFHAILSEV 326
RD FF T Y FHA+L EV
Sbjct: 125 RDRYFFLTPPYPPAFHALLGEV 146
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 409 LWLLMFNFVAKHRRVPVVSIHSCSVL 486
L+ LMFNFV+ +V S H CS L
Sbjct: 795 LFSLMFNFVSYFFQVCAPSCHDCSTL 820
>01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266
Length = 132
Score = 27.1 bits (57), Expect = 8.8
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2
Query: 314 NCMKCTYITFCKKKNC 267
+C C Y+ FCK++ C
Sbjct: 10 SCRSCQYVNFCKREAC 25
>01_05_0169 + 18874799-18875057,18875103-18875338
Length = 164
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 261 RDAIFFFTKCYVCTFHAILSEV 326
RD FF T Y FHA+L EV
Sbjct: 65 RDRYFFLTPPYPPAFHALLGEV 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,823,305
Number of Sequences: 37544
Number of extensions: 171235
Number of successful extensions: 321
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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