Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N03
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039046-10|AAB94220.2|  233|Caenorhabditis elegans Serpentine r...    28   4.5  
AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine re...    28   4.5  
AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL110500-4|CAB54484.1|  215|Caenorhabditis elegans Hypothetical ...    27   6.0  
AB112930-1|BAD07035.1|  215|Caenorhabditis elegans Rab27 protein.      27   6.0  

>AF039046-10|AAB94220.2|  233|Caenorhabditis elegans Serpentine
           receptor, class j protein23, isoform a protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 193 SVISIKFTFKLSCLFFNYAKSSIEMQFFFLQNVMY--VHFMQFFLKCFCFEGHNL 351
           +++   FT++   LF N A +   M +  +  V+Y  +H + + + C+ + G ++
Sbjct: 104 AILHAHFTYRFMVLFKNKALAKYFMPYGLILTVLYCILHMIYWVITCYVYIGADM 158


>AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine
           receptor, class j protein23, isoform b protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 193 SVISIKFTFKLSCLFFNYAKSSIEMQFFFLQNVMY--VHFMQFFLKCFCFEGHNL 351
           +++   FT++   LF N A +   M +  +  V+Y  +H + + + C+ + G ++
Sbjct: 104 AILHAHFTYRFMVLFKNKALAKYFMPYGLILTVLYCILHMIYWVITCYVYIGADM 158


>AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical
           protein ZK105.5 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 295 YVHFMQFFLKCFCFEGHNLLILTS 366
           Y +F  +F  CFCFEG   L+ +S
Sbjct: 35  YPNFNLYFWPCFCFEGSRDLLRSS 58


>Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical
           protein F25D7.5 protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 229 CLFFN--YAKSSIEMQFFFLQNVMYVHFMQFFLKC 327
           C FF+  + K S ++ FFF  NV  +   QFF +C
Sbjct: 278 CKFFSCDFRKKS-KISFFFFGNVSILKNFQFFFRC 311


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 311 CMKCTYITFCKKKNCISI 258
           C+K TY+   +KKNC+ I
Sbjct: 555 CIKLTYLNLTRKKNCLLI 572


>AL110500-4|CAB54484.1|  215|Caenorhabditis elegans Hypothetical
           protein Y87G2A.4 protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 105 FIIITLLTNYCNFMGLRDYLLKLN*KVHG*C 197
           FI+I  +TN  +F+ +RD+L +L  KVH  C
Sbjct: 92  FILIFDITNEQSFLNIRDWLSQL--KVHAYC 120


>AB112930-1|BAD07035.1|  215|Caenorhabditis elegans Rab27 protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 105 FIIITLLTNYCNFMGLRDYLLKLN*KVHG*C 197
           FI+I  +TN  +F+ +RD+L +L  KVH  C
Sbjct: 92  FILIFDITNEQSFLNIRDWLSQL--KVHAYC 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,453,896
Number of Sequences: 27780
Number of extensions: 190313
Number of successful extensions: 428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)